Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AP001284.1-201ENST00000528393 2118 ntBASIC4.88□□□□□ -1.63
LHX3Q9UBR4 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.88□□□□□ -1.63
LHX3Q9UBR4 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC017079.1-201ENST00000333650 415 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 NRBF2P3-201ENST00000432731 865 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 CYCSP11-201ENST00000436426 315 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 Z80107.2-201ENST00000445127 392 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 RPS5P7-201ENST00000456664 608 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC104971.1-201ENST00000495117 578 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC091868.1-201ENST00000508746 304 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AL671862.1-201ENST00000515851 349 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC104997.1-201ENST00000519761 717 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC067805.1-201ENST00000559344 470 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC091042.1-201ENST00000579213 173 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC007620.3-201ENST00000608131 497 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 AC020658.4-201ENST00000613987 684 ntBASIC4.87□□□□□ -1.63
LHX3Q9UBR4 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
LHX3Q9UBR4 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AP005435.3-201ENST00000531260 3198 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 RNU6-1251P-201ENST00000364502 107 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC083799.1-201ENST00000366451 910 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AL035419.1-201ENST00000397037 564 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AL139128.1-201ENST00000413921 941 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC016769.2-201ENST00000414815 475 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 RGS17P1-201ENST00000423358 553 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 NDUFA5P1-201ENST00000433858 341 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AL451139.1-201ENST00000434718 346 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC006466.1-201ENST00000438721 289 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 ARL5AP3-201ENST00000439327 386 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 GYG1P1-201ENST00000460864 698 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 RN7SKP276-201ENST00000516242 268 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AL358913.1-201ENST00000554342 121 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 CYCSP40-201ENST00000575927 294 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC010503.3-201ENST00000594355 540 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC008536.1-201ENST00000602872 669 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC100814.1-201ENST00000606963 623 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC116651.1-201ENST00000609724 556 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC004241.3-201ENST00000611728 517 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC012414.7-202ENST00000622705 1090 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 AC006453.5-201ENST00000636451 619 ntBASIC4.86□□□□□ -1.63
LHX3Q9UBR4 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.86□□□□□ -1.63
LHX3Q9UBR4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms