Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC004948.1-201ENST00000609858 672 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL592429.1-201ENST00000403909 1473 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 MRE11P1-201ENST00000464884 2127 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC004656.1-201ENST00000568479 4951 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 MFSD8-219ENST00000641228 2559 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 RNA5SP433-201ENST00000364491 114 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 RNU6-1200P-201ENST00000384162 107 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 RNU6-253P-201ENST00000384730 105 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL132875.1-201ENST00000403623 949 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC019050.1-201ENST00000418508 492 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 TIMM9P2-201ENST00000419324 266 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC007562.1-201ENST00000421819 517 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 RPL12P12-201ENST00000424633 501 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC073069.1-201ENST00000428657 441 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 KCTD10P1-201ENST00000434203 625 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC093155.1-201ENST00000440164 826 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC023274.2-201ENST00000445264 521 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL035551.1-201ENST00000446931 348 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC104306.1-201ENST00000449702 371 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 RPL23AP60-201ENST00000450011 454 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC068228.1-201ENST00000461723 211 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC084754.1-201ENST00000463466 464 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC023194.2-201ENST00000465398 406 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 RPL23AP71-201ENST00000470966 469 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC098847.1-201ENST00000473094 348 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AP002884.1-201ENST00000479691 655 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL121766.1-201ENST00000547436 487 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC090115.2-201ENST00000548060 883 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 GTF2IP8-201ENST00000560687 584 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC008507.3-201ENST00000585753 472 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC020916.2-201ENST00000591242 360 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC068768.2-201ENST00000602352 343 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC007494.3-201ENST00000624660 743 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC073488.3-201ENST00000631611 778 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 ATE1-AS1-202ENST00000636460 506 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL355488.2-201ENST00000609909 2850 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AL161912.4-201ENST00000623889 2468 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 RBMY1HP-201ENST00000382759 1389 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 DDX43P2-201ENST00000604753 1354 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 AC096656.1-201ENST00000623826 1364 ntBASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
TRIM39Q9HCM9 LYARP1-201ENST00000436977 1501 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 SHQ1P1-201ENST00000437111 1544 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 DCAF13P3-201ENST00000561147 1334 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 NCLP2-201ENST00000416078 1462 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AL390862.1-201ENST00000635467 1469 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms