Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC007068.1-201ENST00000396690 844 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 RN7SL293P-201ENST00000481765 281 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 AC005000.2-201ENST00000605468 310 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 TMEM30CP-203ENST00000637814 1035 ntBASIC4.42□□□□□ -1.7
VPS13AQ96RL7 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS13AQ96RL7 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 QRSL1P2-201ENST00000418582 964 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 AC016772.1-201ENST00000444170 1261 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 FAM27D1-201ENST00000612308 341 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 E2F6P2-201ENST00000420708 748 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 NOTCH2P1-201ENST00000443481 624 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 AC022884.2-201ENST00000578535 580 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 AL451086.1-201ENST00000605596 223 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 MIR3651-201ENST00000630427 90 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 AC092451.3-201ENST00000625067 1343 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 U8.11-201ENST00000384699 133 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 U8.12-201ENST00000384701 133 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 MIR34B-201ENST00000385076 84 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 TBCAP1-201ENST00000436520 327 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 U8.18-201ENST00000459285 133 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 PLGLA-201ENST00000465668 449 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 DUX4L52-201ENST00000549363 777 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS13AQ96RL7 OR2L1P-202ENST00000641567 1023 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 AC120036.2-201ENST00000509729 1474 ntBASIC4.41□□□□□ -1.7
VPS13AQ96RL7 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 UTY-215ENST00000618474 6277 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.4□□□□□ -1.7
VPS13AQ96RL7 AC092681.1-201ENST00000297369 291 ntBASIC4.4□□□□□ -1.7
VPS13AQ96RL7 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 KC877982.1-201ENST00000602313 470 ntBASIC4.4□□□□□ -1.7
VPS13AQ96RL7 DMD-222ENST00000474231 5209 ntTSL 5 BASIC4.4□□□□□ -1.7
VPS13AQ96RL7 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 CEP63-202ENST00000337090 5632 ntAPPRIS P3 TSL 5 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 RPL21P17-201ENST00000397467 475 ntBASIC4.4□□□□□ -1.71
VPS13AQ96RL7 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 RPL7AP49-201ENST00000429522 581 ntBASIC4.4□□□□□ -1.71
VPS13AQ96RL7 AL591438.1-201ENST00000433508 581 ntBASIC4.4□□□□□ -1.71
VPS13AQ96RL7 AL035246.1-201ENST00000433554 1255 ntBASIC4.4□□□□□ -1.71
VPS13AQ96RL7 SETP6-201ENST00000479329 568 ntBASIC4.4□□□□□ -1.71
VPS13AQ96RL7 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS13AQ96RL7 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms