Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PRKDCP78527 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 AP000580.1-201ENST00000404439 358 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 AC091286.1-201ENST00000431233 461 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 AC090136.1-201ENST00000520009 240 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC3.22□□□□□ -1.89
PRKDCP78527 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC3.22□□□□□ -1.89
PRKDCP78527 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 AC007546.1-201ENST00000619452 559 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 AL445363.3-201ENST00000623080 671 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.22□□□□□ -1.89
PRKDCP78527 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC3.22□□□□□ -1.89
PRKDCP78527 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC3.22□□□□□ -1.89
PRKDCP78527 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.22□□□□□ -1.89
PRKDCP78527 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
PRKDCP78527 Y_RNA.510-201ENST00000384511 114 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC3.22□□□□□ -1.89
PRKDCP78527 AC017019.1-201ENST00000426129 261 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 GAPDHP14-201ENST00000450472 937 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 AL133244.1-201ENST00000456007 258 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 HMGN1P15-201ENST00000513870 295 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 MIR4513-201ENST00000581077 86 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 AC090912.3-201ENST00000609775 533 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC3.22□□□□□ -1.89
PRKDCP78527 RNA5SP22-201ENST00000365393 109 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 RNA5SP36-201ENST00000410197 133 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC3.22□□□□□ -1.89
PRKDCP78527 VN1R37P-201ENST00000419096 748 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 AC004069.2-201ENST00000505438 1114 ntBASIC3.22□□□□□ -1.89
PRKDCP78527 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PRKDCP78527 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.22□□□□□ -1.89
PRKDCP78527 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
PRKDCP78527 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC3.21□□□□□ -1.89
PRKDCP78527 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.21□□□□□ -1.89
PRKDCP78527 AL159987.2-201ENST00000432754 307 ntBASIC3.21□□□□□ -1.89
PRKDCP78527 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.21□□□□□ -1.89
PRKDCP78527 IGBP1P4-201ENST00000503202 879 ntBASIC3.21□□□□□ -1.89
PRKDCP78527 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.21□□□□□ -1.89
PRKDCP78527 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC3.21□□□□□ -1.89
PRKDCP78527 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.21□□□□□ -1.89
PRKDCP78527 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.21□□□□□ -1.89
PRKDCP78527 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.21□□□□□ -1.89
PRKDCP78527 AC007529.1-201ENST00000418574 2178 ntBASIC3.21□□□□□ -1.89
PRKDCP78527 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
PRKDCP78527 THSD7B-201ENST00000272643 5939 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
PRKDCP78527 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 AC007618.1-201ENST00000366455 732 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 MIR490-201ENST00000384865 128 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 SNORA48.2-201ENST00000390926 124 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 AK4P6-201ENST00000505168 528 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 RNA5SP519-201ENST00000516480 119 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.21□□□□□ -1.9
PRKDCP78527 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
PRKDCP78527 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 AC073342.2-201ENST00000595842 1800 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 SPATA31D5P-201ENST00000376459 4784 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC3.21□□□□□ -1.9
PRKDCP78527 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PRKDCP78527 OR8F1P-201ENST00000425243 930 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 AC090142.1-201ENST00000465776 462 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 ACTR3P3-201ENST00000480448 893 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.21□□□□□ -1.9
PRKDCP78527 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC3.21□□□□□ -1.9
PRKDCP78527 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.21□□□□□ -1.9
PRKDCP78527 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC3.21□□□□□ -1.9
PRKDCP78527 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 MAPK10-371ENST00000641952 5209 ntBASIC3.21□□□□□ -1.9
PRKDCP78527 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
PRKDCP78527 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 NLGN4X-204ENST00000381095 5870 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
PRKDCP78527 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRKDCP78527 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms