Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LIM2P55344 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LIM2P55344 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LIM2P55344 AL672167.1-205ENST00000641112 3080 ntBASIC4.57□□□□□ -1.68
LIM2P55344 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
LIM2P55344 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIM2P55344 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIM2P55344 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIM2P55344 CASC19-206ENST00000641028 1430 ntBASIC4.56□□□□□ -1.68
LIM2P55344 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIM2P55344 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.56□□□□□ -1.68
LIM2P55344 AC126323.6-202ENST00000568092 3511 ntBASIC4.56□□□□□ -1.68
LIM2P55344 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
LIM2P55344 U3.30-201ENST00000391308 210 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.56□□□□□ -1.68
LIM2P55344 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.56□□□□□ -1.68
LIM2P55344 TRIM60P17-201ENST00000415181 719 ntBASIC4.56□□□□□ -1.68
LIM2P55344 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.56□□□□□ -1.68
LIM2P55344 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIM2P55344 RGS17P1-201ENST00000423358 553 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AL590762.4-201ENST00000425885 253 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.56□□□□□ -1.68
LIM2P55344 RPS17P8-201ENST00000434525 335 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AL451139.1-201ENST00000434718 346 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.56□□□□□ -1.68
LIM2P55344 XKRYP6-201ENST00000440468 1116 ntBASIC4.56□□□□□ -1.68
LIM2P55344 XKRYP3-201ENST00000442113 1116 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AC010733.1-201ENST00000451515 401 ntBASIC4.56□□□□□ -1.68
LIM2P55344 RPS3AP53-201ENST00000454716 778 ntBASIC4.56□□□□□ -1.68
LIM2P55344 C1DP3-201ENST00000455013 423 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.56□□□□□ -1.68
LIM2P55344 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.56□□□□□ -1.68
LIM2P55344 RPS3AP41-201ENST00000462701 778 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AC012123.2-201ENST00000485809 248 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.56□□□□□ -1.68
LIM2P55344 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.56□□□□□ -1.68
LIM2P55344 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC4.56□□□□□ -1.68
LIM2P55344 AP001804.2-201ENST00000533932 910 ntBASIC4.56□□□□□ -1.68
LIM2P55344 DUX4L52-201ENST00000549363 777 ntBASIC4.56□□□□□ -1.68
LIM2P55344 PCNPP1-201ENST00000552501 511 ntBASIC4.56□□□□□ -1.68
LIM2P55344 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.56□□□□□ -1.68
LIM2P55344 MIR3934-201ENST00000579806 107 ntBASIC4.56□□□□□ -1.68
LIM2P55344 MIR4436B2-201ENST00000581415 91 ntBASIC4.56□□□□□ -1.68
LIM2P55344 MIR4436B1-201ENST00000583272 91 ntBASIC4.56□□□□□ -1.68
LIM2P55344 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.56□□□□□ -1.68
LIM2P55344 AC022726.1-201ENST00000587475 207 ntBASIC4.56□□□□□ -1.68
LIM2P55344 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.56□□□□□ -1.68
LIM2P55344 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.56□□□□□ -1.68
LIM2P55344 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.56□□□□□ -1.68
LIM2P55344 BNIP3P41-202ENST00000616656 861 ntBASIC4.56□□□□□ -1.68
LIM2P55344 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.56□□□□□ -1.68
LIM2P55344 AC006453.5-201ENST00000636451 619 ntBASIC4.56□□□□□ -1.68
LIM2P55344 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIM2P55344 AC087565.3-202ENST00000642085 1603 ntBASIC4.56□□□□□ -1.68
LIM2P55344 TLK1P1-201ENST00000456760 2440 ntBASIC4.56□□□□□ -1.68
LIM2P55344 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIM2P55344 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIM2P55344 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.56□□□□□ -1.68
LIM2P55344 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIM2P55344 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIM2P55344 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LIM2P55344 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIM2P55344 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIM2P55344 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
LIM2P55344 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LIM2P55344 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LIM2P55344 MIR550A3-201ENST00000390735 95 ntBASIC4.55□□□□□ -1.68
LIM2P55344 RNU2-22P-201ENST00000411266 212 ntBASIC4.55□□□□□ -1.68
LIM2P55344 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.55□□□□□ -1.68
LIM2P55344 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.55□□□□□ -1.68
LIM2P55344 LINC00993-201ENST00000420453 540 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.55□□□□□ -1.68
LIM2P55344 AC104837.2-201ENST00000427236 424 ntBASIC4.55□□□□□ -1.68
LIM2P55344 NPM1P22-201ENST00000427761 952 ntBASIC4.55□□□□□ -1.68
LIM2P55344 LYPLA1P1-201ENST00000434514 622 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 OTX2P1-201ENST00000450956 354 ntBASIC4.55□□□□□ -1.68
LIM2P55344 RBMY2TP-201ENST00000451162 947 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.55□□□□□ -1.68
LIM2P55344 AC063943.1-201ENST00000465434 453 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AC105918.1-201ENST00000474399 838 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AC098583.1-201ENST00000480875 255 ntBASIC4.55□□□□□ -1.68
LIM2P55344 RN7SL591P-201ENST00000496150 292 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.55□□□□□ -1.68
LIM2P55344 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.55□□□□□ -1.68
LIM2P55344 RN7SKP34-201ENST00000516142 244 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.55□□□□□ -1.68
LIM2P55344 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 BUD31P1-201ENST00000521828 359 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.55□□□□□ -1.68
LIM2P55344 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.55□□□□□ -1.68
LIM2P55344 BRD9P1-201ENST00000529855 560 ntBASIC4.55□□□□□ -1.68
LIM2P55344 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.55□□□□□ -1.68
LIM2P55344 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms