Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TCP11X3P-202ENST00000514289 1254 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 RNU2-30P-201ENST00000516209 141 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC4.45□□□□□ -1.7
FOXA1P55317 AC005000.1-201ENST00000536192 288 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.45□□□□□ -1.7
FOXA1P55317 HMGN2P6-201ENST00000551091 273 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC051619.2-201ENST00000559063 397 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC009117.1-201ENST00000563948 554 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC091178.1-203ENST00000584586 279 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.45□□□□□ -1.7
FOXA1P55317 RPL7P50-201ENST00000600588 727 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC073091.2-201ENST00000603205 907 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AL353726.1-201ENST00000614041 1000 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 OR5AQ1P-203ENST00000641818 1529 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.45□□□□□ -1.7
FOXA1P55317 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA1P55317 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA1P55317 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA1P55317 AC139713.2-215ENST00000641428 5037 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA1P55317 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA1P55317 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA1P55317 AC133552.1-201ENST00000569988 4007 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 UGT2B26P-201ENST00000508672 1613 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA1P55317 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA1P55317 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA1P55317 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
FOXA1P55317 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA1P55317 HDGFP1-201ENST00000405943 252 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA1P55317 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA1P55317 RNA5SP113-201ENST00000410486 84 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 VDAC1P9-201ENST00000412766 841 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 CEACAMP8-201ENST00000413902 580 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 RPL23AP27-201ENST00000415161 451 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA1P55317 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA1P55317 OR1H1P-201ENST00000448731 937 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA1P55317 AC063943.1-201ENST00000465434 453 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA1P55317 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA1P55317 GOLGA5P1-201ENST00000507317 980 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA1P55317 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA1P55317 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.44□□□□□ -1.7
FOXA1P55317 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA1P55317 AC011487.3-201ENST00000593607 453 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 AC090181.2-201ENST00000602975 672 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA1P55317 AC008966.2-201ENST00000606157 453 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 AP002360.3-201ENST00000607673 710 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 OR7M1P-201ENST00000608946 533 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.44□□□□□ -1.7
FOXA1P55317 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA1P55317 AC017104.4-201ENST00000636283 1592 ntBASIC4.44□□□□□ -1.7
FOXA1P55317 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
FOXA1P55317 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
FOXA1P55317 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA1P55317 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.43□□□□□ -1.7
FOXA1P55317 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA1P55317 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA1P55317 AC083843.3-201ENST00000623679 2186 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA1P55317 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA1P55317 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA1P55317 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA1P55317 COX6B1P1-201ENST00000415962 213 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA1P55317 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA1P55317 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA1P55317 SCARNA10-201ENST00000459255 330 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 RPL7P16-201ENST00000479738 738 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 AC090013.1-201ENST00000485147 480 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA1P55317 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC4.43□□□□□ -1.7
FOXA1P55317 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.43□□□□□ -1.7
FOXA1P55317 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA1P55317 AL110118.1-201ENST00000553543 400 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 BGLT3-201ENST00000564523 994 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 AC016180.1-201ENST00000567945 403 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 AC023762.1-201ENST00000603280 584 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA1P55317 AL353600.1-201ENST00000608148 251 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 AC016769.4-201ENST00000616893 535 ntBASIC4.43□□□□□ -1.7
FOXA1P55317 AL122125.1-201ENST00000616999 600 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms