Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC008549.2-201ENST00000333482 706 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC013470.3-201ENST00000420252 1194 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 CKS1BP6-201ENST00000424932 240 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 RPS17P8-201ENST00000434525 335 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 MTND6P18-201ENST00000439477 513 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 HMGB3P9-201ENST00000441799 583 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 RHEBP2-201ENST00000450289 600 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AL645937.3-201ENST00000453647 936 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 RN7SL808P-201ENST00000496066 299 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 GAPDHP56-201ENST00000506031 988 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 EIF4EP5-201ENST00000528228 640 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC022882.1-201ENST00000532142 501 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 MIR4675-201ENST00000577898 77 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AP002884.5-201ENST00000595053 1132 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 AL359922.3-201ENST00000624779 1670 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 MIPEPP2-201ENST00000422560 1819 ntBASIC5.37□□□□□ -1.55
CCDC65Q8IXS2 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 U3.35-201ENST00000408405 208 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC114755.2-201ENST00000413520 361 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 MRPL48P1-201ENST00000445390 636 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC234781.3-201ENST00000452540 973 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC107918.3-201ENST00000533272 382 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 GCSHP4-201ENST00000538792 439 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC008033.2-201ENST00000542626 177 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC007497.1-201ENST00000610421 561 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC068870.2-201ENST00000620635 389 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC018445.2-201ENST00000622987 260 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AP003499.2-201ENST00000624100 483 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 SCN1A-220ENST00000641603 12506 ntBASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC65Q8IXS2 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 CASC19-204ENST00000641001 2055 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 RN7SKP104-201ENST00000362605 328 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 MIR105-2-201ENST00000385083 81 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 SNORA81-201ENST00000408493 178 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 LINC00993-201ENST00000420453 540 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 E2F6P2-201ENST00000420708 748 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 OR2AM1P-201ENST00000422137 422 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 AC004938.1-201ENST00000438468 308 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 AC008410.1-201ENST00000483777 339 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 AC004453.1-201ENST00000487895 408 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 AC020890.1-201ENST00000491837 504 ntBASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC65Q8IXS2 AC008638.1-201ENST00000506035 866 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 135.6 ms