Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.42□□□□□ -1.54
PTPN9P43378 RPA2P2-201ENST00000419698 796 ntBASIC5.42□□□□□ -1.54
PTPN9P43378 VN1R42P-201ENST00000424651 344 ntBASIC5.42□□□□□ -1.54
PTPN9P43378 AL645638.1-201ENST00000440519 361 ntBASIC5.42□□□□□ -1.54
PTPN9P43378 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 RPL7P55-201ENST00000450522 746 ntBASIC5.42□□□□□ -1.54
PTPN9P43378 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.42□□□□□ -1.54
PTPN9P43378 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC5.42□□□□□ -1.54
PTPN9P43378 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 AC023158.1-201ENST00000561632 1025 ntBASIC5.42□□□□□ -1.54
PTPN9P43378 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC5.42□□□□□ -1.54
PTPN9P43378 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.42□□□□□ -1.54
PTPN9P43378 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.42□□□□□ -1.54
PTPN9P43378 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.42□□□□□ -1.54
PTPN9P43378 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 PANDAR-201ENST00000629595 1506 ntBASIC5.42□□□□□ -1.54
PTPN9P43378 AC235565.1-201ENST00000456962 1325 ntBASIC5.42□□□□□ -1.54
PTPN9P43378 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.42□□□□□ -1.54
PTPN9P43378 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTPN9P43378 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.42□□□□□ -1.54
PTPN9P43378 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 MTND5P11-201ENST00000511037 1812 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
PTPN9P43378 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 RNU4-74P-201ENST00000411280 161 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.41□□□□□ -1.54
PTPN9P43378 BX664727.1-201ENST00000416024 466 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 AL645931.1-201ENST00000439737 410 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 AC245047.2-201ENST00000441060 530 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AC023512.1-201ENST00000444513 499 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.41□□□□□ -1.54
PTPN9P43378 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.41□□□□□ -1.54
PTPN9P43378 NAMPTP2-201ENST00000505629 1115 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC5.41□□□□□ -1.54
PTPN9P43378 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.41□□□□□ -1.54
PTPN9P43378 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 AC104229.1-201ENST00000561364 255 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 MIR4660-201ENST00000583549 74 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.41□□□□□ -1.54
PTPN9P43378 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 AC034229.4-201ENST00000607861 441 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AP005432.2-201ENST00000608162 586 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AC021851.1-201ENST00000608537 1082 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AP005229.2-201ENST00000609980 697 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AC004241.3-201ENST00000611728 517 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 MIR6862-1-201ENST00000613016 70 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 MIR6862-2-201ENST00000614755 70 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AC004808.1-201ENST00000627671 721 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 OR4G3P-201ENST00000633500 913 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 AL356118.1-201ENST00000635272 1078 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
PTPN9P43378 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
PTPN9P43378 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.41□□□□□ -1.54
PTPN9P43378 AC008432.1-201ENST00000615912 1320 ntBASIC5.41□□□□□ -1.54
PTPN9P43378 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
PTPN9P43378 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTPN9P43378 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
PTPN9P43378 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.4□□□□□ -1.54
PTPN9P43378 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
PTPN9P43378 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
PTPN9P43378 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.4□□□□□ -1.54
PTPN9P43378 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
PTPN9P43378 PABPC1P6-201ENST00000445594 1829 ntBASIC5.4□□□□□ -1.54
PTPN9P43378 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
PTPN9P43378 SNORA17.1-201ENST00000362945 126 ntBASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 154.8 ms