Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CUX1P39880 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
CUX1P39880 RNA5SP171-201ENST00000391071 115 ntBASIC7.71□□□□□ -1.18
CUX1P39880 RPS27AP11-201ENST00000402798 447 ntBASIC7.71□□□□□ -1.18
CUX1P39880 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC7.71□□□□□ -1.18
CUX1P39880 AL132765.1-201ENST00000434165 553 ntBASIC7.71□□□□□ -1.18
CUX1P39880 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC7.71□□□□□ -1.18
CUX1P39880 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC7.71□□□□□ -1.18
CUX1P39880 IGKV2OR2-2-201ENST00000605025 300 ntBASIC7.71□□□□□ -1.18
CUX1P39880 AC008785.1-201ENST00000624475 456 ntBASIC7.71□□□□□ -1.18
CUX1P39880 MIR3653-201ENST00000625572 110 ntBASIC7.71□□□□□ -1.18
CUX1P39880 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CUX1P39880 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
CUX1P39880 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC7.71□□□□□ -1.18
CUX1P39880 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CUX1P39880 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC7.7□□□□□ -1.18
CUX1P39880 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC7.7□□□□□ -1.18
CUX1P39880 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.18
CUX1P39880 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 OR5P1P-201ENST00000299512 925 ntBASIC7.7□□□□□ -1.18
CUX1P39880 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 MIR372-201ENST00000362225 67 ntBASIC7.7□□□□□ -1.18
CUX1P39880 RNU1-132P-201ENST00000364300 164 ntBASIC7.7□□□□□ -1.18
CUX1P39880 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 HNRNPA1P29-201ENST00000426409 879 ntBASIC7.7□□□□□ -1.18
CUX1P39880 NFYAP1-201ENST00000431953 972 ntBASIC7.7□□□□□ -1.18
CUX1P39880 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC7.7□□□□□ -1.18
CUX1P39880 IGKV1OR2-118-201ENST00000603238 347 ntBASIC7.7□□□□□ -1.18
CUX1P39880 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC7.7□□□□□ -1.18
CUX1P39880 OR2L1P-202ENST00000641567 1023 ntBASIC7.7□□□□□ -1.18
CUX1P39880 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CUX1P39880 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
CUX1P39880 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
CUX1P39880 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC7.69□□□□□ -1.18
CUX1P39880 DHX9P1-201ENST00000436565 3076 ntBASIC7.69□□□□□ -1.18
CUX1P39880 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CUX1P39880 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC7.69□□□□□ -1.18
CUX1P39880 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC7.69□□□□□ -1.18
CUX1P39880 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC7.69□□□□□ -1.18
CUX1P39880 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC7.69□□□□□ -1.18
CUX1P39880 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC7.69□□□□□ -1.18
CUX1P39880 AC005899.7-201ENST00000618199 588 ntBASIC7.69□□□□□ -1.18
CUX1P39880 AC112200.1-201ENST00000625015 234 ntBASIC7.69□□□□□ -1.18
CUX1P39880 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC7.69□□□□□ -1.18
CUX1P39880 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
CUX1P39880 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC7.69□□□□□ -1.18
CUX1P39880 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
CUX1P39880 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
CUX1P39880 OR51H2P-202ENST00000641424 3046 ntBASIC7.69□□□□□ -1.18
CUX1P39880 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
CUX1P39880 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CUX1P39880 RNU1-94P-201ENST00000362627 173 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AL161909.1-201ENST00000397390 712 ntBASIC7.68□□□□□ -1.18
CUX1P39880 RPL23AP52-201ENST00000439311 478 ntBASIC7.68□□□□□ -1.18
CUX1P39880 Z95327.1-201ENST00000446082 482 ntBASIC7.68□□□□□ -1.18
CUX1P39880 RPL23AP43-201ENST00000446445 471 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC7.68□□□□□ -1.18
CUX1P39880 RN7SL542P-201ENST00000467147 294 ntBASIC7.68□□□□□ -1.18
CUX1P39880 SAP18P1-201ENST00000512058 390 ntBASIC7.68□□□□□ -1.18
CUX1P39880 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC7.68□□□□□ -1.18
CUX1P39880 SNORA31.9-201ENST00000516429 84 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC7.68□□□□□ -1.18
CUX1P39880 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC7.68□□□□□ -1.18
CUX1P39880 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC7.68□□□□□ -1.18
CUX1P39880 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
CUX1P39880 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC7.68□□□□□ -1.18
CUX1P39880 AC010547.7-201ENST00000570323 333 ntBASIC7.68□□□□□ -1.18
CUX1P39880 BX005214.3-202ENST00000619809 325 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AL137141.1-201ENST00000624622 4836 ntBASIC7.68□□□□□ -1.18
CUX1P39880 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CUX1P39880 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CUX1P39880 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
CUX1P39880 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC7.68□□□□□ -1.18
CUX1P39880 AC018628.1-201ENST00000624147 3819 ntBASIC7.68□□□□□ -1.18
CUX1P39880 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CUX1P39880 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC7.68□□□□□ -1.18
CUX1P39880 SPRR2C-201ENST00000290702 219 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AMZ2P2-201ENST00000406819 1057 ntBASIC7.68□□□□□ -1.18
CUX1P39880 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC7.68□□□□□ -1.18
CUX1P39880 AL356095.1-201ENST00000417217 199 ntBASIC7.68□□□□□ -1.18
CUX1P39880 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CUX1P39880 AC022034.3-201ENST00000471393 478 ntBASIC7.68□□□□□ -1.18
CUX1P39880 OR8A2P-201ENST00000528631 952 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC7.68□□□□□ -1.18
CUX1P39880 LINC00622-201ENST00000562811 1570 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AC023043.4-201ENST00000612081 449 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AC011815.3-201ENST00000624194 473 ntBASIC7.68□□□□□ -1.18
CUX1P39880 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC7.67□□□□□ -1.18
CUX1P39880 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
CUX1P39880 AL034370.1-201ENST00000397254 1590 ntBASIC7.67□□□□□ -1.18
CUX1P39880 LARP1BP1-201ENST00000506036 1359 ntBASIC7.67□□□□□ -1.18
CUX1P39880 COX6CP15-201ENST00000426313 211 ntBASIC7.67□□□□□ -1.18
CUX1P39880 BTF3P10-201ENST00000433415 495 ntBASIC7.67□□□□□ -1.18
CUX1P39880 AL935212.3-201ENST00000450729 284 ntBASIC7.67□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms