Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC006133.1-201ENST00000617106 264 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL5A1P20908 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 AP000648.2-201ENST00000624182 404 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
COL5A1P20908 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.58□□□□□ -1.68
COL5A1P20908 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 MAPK10-328ENST00000641553 4009 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC4.58□□□□□ -1.68
COL5A1P20908 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
COL5A1P20908 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 CKS1BP6-201ENST00000424932 240 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.58□□□□□ -1.68
COL5A1P20908 AP001324.1-201ENST00000428553 399 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL5A1P20908 AC104763.1-201ENST00000475274 360 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 RPL36AP41-201ENST00000493820 306 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 AC091868.1-201ENST00000508746 304 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
COL5A1P20908 AC007016.1-201ENST00000512110 244 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 RNA5SP230-201ENST00000517039 122 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.58□□□□□ -1.68
COL5A1P20908 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 AC090286.3-201ENST00000573133 187 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 MIR3138-201ENST00000585238 82 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 AL121932.1-201ENST00000605542 214 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 AC011815.3-201ENST00000624194 473 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL5A1P20908 AL034370.1-201ENST00000397254 1590 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 SOCS5P3-201ENST00000425115 1576 ntBASIC4.58□□□□□ -1.68
COL5A1P20908 DMD-228ENST00000541735 7080 ntTSL 5 BASIC4.58□□□□□ -1.68
COL5A1P20908 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 ZNF137P-201ENST00000456718 1920 ntBASIC4.57□□□□□ -1.68
COL5A1P20908 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 RAD17P1-201ENST00000418130 2042 ntBASIC4.57□□□□□ -1.68
COL5A1P20908 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC4.57□□□□□ -1.68
COL5A1P20908 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 RAD23BP1-201ENST00000421404 1227 ntBASIC4.57□□□□□ -1.68
COL5A1P20908 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.57□□□□□ -1.68
COL5A1P20908 AL049830.4-201ENST00000555149 351 ntBASIC4.57□□□□□ -1.68
COL5A1P20908 CYCSP40-201ENST00000575927 294 ntBASIC4.57□□□□□ -1.68
COL5A1P20908 AC053481.3-201ENST00000577881 843 ntBASIC4.57□□□□□ -1.68
COL5A1P20908 RN7SL371P-201ENST00000578099 267 ntBASIC4.57□□□□□ -1.68
COL5A1P20908 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.57□□□□□ -1.68
COL5A1P20908 AC073091.2-201ENST00000603205 907 ntBASIC4.57□□□□□ -1.68
COL5A1P20908 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC4.57□□□□□ -1.68
COL5A1P20908 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.57□□□□□ -1.68
COL5A1P20908 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
COL5A1P20908 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.57□□□□□ -1.68
COL5A1P20908 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
COL5A1P20908 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
COL5A1P20908 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL5A1P20908 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A1P20908 AL445189.1-201ENST00000405722 338 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 RPL36AP36-201ENST00000418616 301 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.56□□□□□ -1.68
COL5A1P20908 RPS3AP54-201ENST00000435535 734 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.56□□□□□ -1.68
COL5A1P20908 NDUFB4P12-201ENST00000513465 390 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 Y_RNA.719-201ENST00000517156 106 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.56□□□□□ -1.68
COL5A1P20908 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.56□□□□□ -1.68
COL5A1P20908 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.56□□□□□ -1.68
COL5A1P20908 RN7SL652P-201ENST00000577769 300 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.56□□□□□ -1.68
COL5A1P20908 AL591034.3-201ENST00000605511 685 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 AC112200.1-201ENST00000625015 234 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.56□□□□□ -1.68
COL5A1P20908 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.56□□□□□ -1.68
COL5A1P20908 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL5A1P20908 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
COL5A1P20908 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
COL5A1P20908 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC4.56□□□□□ -1.68
COL5A1P20908 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.56□□□□□ -1.68
COL5A1P20908 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A1P20908 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.56□□□□□ -1.68
COL5A1P20908 OR14L1P-202ENST00000641545 3009 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC4.56□□□□□ -1.68
COL5A1P20908 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A1P20908 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.56□□□□□ -1.68
COL5A1P20908 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL5A1P20908 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL5A1P20908 GAPDHP49-201ENST00000421421 961 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 AL356387.2-201ENST00000422272 243 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 ACTR3P2-201ENST00000439585 1257 ntBASIC4.56□□□□□ -1.68
COL5A1P20908 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms