Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC4.67□□□□□ -1.66
COL6A3P12111 PARP4P3-201ENST00000510265 317 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 AL137058.3-201ENST00000624531 3099 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC4.67□□□□□ -1.66
COL6A3P12111 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL6A3P12111 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 CTNND1-221ENST00000529873 5931 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.67□□□□□ -1.66
COL6A3P12111 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.67□□□□□ -1.66
COL6A3P12111 MIR3945-201ENST00000581853 98 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 AC135507.2-201ENST00000612443 309 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 AC109446.4-201ENST00000623235 2755 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
COL6A3P12111 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 U3.26-201ENST00000391236 204 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 BX510359.1-201ENST00000456973 237 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC4.67□□□□□ -1.66
COL6A3P12111 snoU109.5-201ENST00000516231 132 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 FAM27D1-201ENST00000612308 341 ntBASIC4.67□□□□□ -1.66
COL6A3P12111 ZBTB43-201ENST00000373457 5695 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
COL6A3P12111 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A3P12111 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
COL6A3P12111 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC4.66□□□□□ -1.66
COL6A3P12111 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 AC093829.1-201ENST00000506662 1618 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 U3.32-201ENST00000408116 212 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 RPL19P16-201ENST00000433839 588 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A3P12111 IGKV2D-19-201ENST00000523346 262 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 DYNLL1P4-201ENST00000549314 266 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A3P12111 MTCO1P46-201ENST00000451639 1491 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 AC093297.3-201ENST00000607056 2517 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 SLMAP-203ENST00000383718 6749 ntTSL 2 BASIC4.66□□□□□ -1.66
COL6A3P12111 AC016588.2-201ENST00000632484 3021 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
COL6A3P12111 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.66□□□□□ -1.66
COL6A3P12111 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
COL6A3P12111 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
COL6A3P12111 LSAMP-205ENST00000490035 9446 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 RN7SKP153-201ENST00000365026 316 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 MIR3065-201ENST00000390137 79 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.66□□□□□ -1.66
COL6A3P12111 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A3P12111 AC025518.1-201ENST00000479856 347 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A3P12111 AC069304.1-201ENST00000491593 704 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.66□□□□□ -1.66
COL6A3P12111 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.66□□□□□ -1.66
COL6A3P12111 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 ERG-210ENST00000442448 5034 ntTSL 5 BASIC4.66□□□□□ -1.66
COL6A3P12111 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 AC135352.1-201ENST00000506173 1418 ntBASIC4.66□□□□□ -1.66
COL6A3P12111 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A3P12111 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC4.66□□□□□ -1.66
COL6A3P12111 MIR490-201ENST00000384865 128 ntBASIC4.65□□□□□ -1.66
COL6A3P12111 Z98745.1-201ENST00000402553 494 ntBASIC4.65□□□□□ -1.66
COL6A3P12111 AL035696.2-201ENST00000407941 709 ntBASIC4.65□□□□□ -1.66
COL6A3P12111 AL451050.1-201ENST00000450126 415 ntBASIC4.65□□□□□ -1.66
COL6A3P12111 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL6A3P12111 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.65□□□□□ -1.66
COL6A3P12111 VLDLR-203ENST00000382100 9163 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL6A3P12111 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.65□□□□□ -1.66
COL6A3P12111 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
COL6A3P12111 ANKRD36P1-201ENST00000344424 659 ntBASIC4.65□□□□□ -1.67
COL6A3P12111 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A3P12111 AL160175.1-201ENST00000428124 247 ntBASIC4.65□□□□□ -1.67
COL6A3P12111 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A3P12111 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A3P12111 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.65□□□□□ -1.67
COL6A3P12111 TVP23BP1-201ENST00000557500 617 ntBASIC4.65□□□□□ -1.67
COL6A3P12111 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A3P12111 MIR6500-201ENST00000622700 86 ntBASIC4.65□□□□□ -1.67
COL6A3P12111 AC119674.1-212ENST00000641155 993 ntBASIC4.65□□□□□ -1.67
COL6A3P12111 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC4.65□□□□□ -1.67
COL6A3P12111 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC4.65□□□□□ -1.67
COL6A3P12111 CEP63-202ENST00000337090 5632 ntAPPRIS P3 TSL 5 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms