Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HMGB1P09429 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HMGB1P09429 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
HMGB1P09429 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.7□□□□□ -1.34
HMGB1P09429 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 OR7E156P-201ENST00000400303 464 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 RNU6-77P-201ENST00000410554 91 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AC096921.1-201ENST00000411661 375 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AC245060.4-201ENST00000413293 1121 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 TRIM60P5Y-201ENST00000413946 574 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 RPS12P23-201ENST00000419579 400 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 NANOGP9-201ENST00000439890 892 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 RPS23P9-201ENST00000448848 438 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 MYO5BP2-201ENST00000449815 1277 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 PFN1P8-201ENST00000497012 543 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AC010374.1-201ENST00000503762 1237 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 NDUFB4P12-201ENST00000513465 390 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 AP003355.1-201ENST00000518956 587 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 DCN-210ENST00000547568 823 ntTSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.7□□□□□ -1.34
HMGB1P09429 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 AC099669.2-201ENST00000616549 437 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 AC068880.4-201ENST00000623082 495 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
HMGB1P09429 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
HMGB1P09429 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HMGB1P09429 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HMGB1P09429 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
HMGB1P09429 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
HMGB1P09429 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC6.7□□□□□ -1.34
HMGB1P09429 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC6.7□□□□□ -1.34
HMGB1P09429 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
HMGB1P09429 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 YES1P1-201ENST00000418510 1628 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 MFSD8-220ENST00000641243 1422 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
HMGB1P09429 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.69□□□□□ -1.34
HMGB1P09429 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 AC023490.2-201ENST00000359859 470 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 HYKK-202ENST00000408962 847 ntTSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 NUP35P2-201ENST00000416748 943 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AL354868.1-201ENST00000417077 482 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 GAPDHP49-201ENST00000421421 961 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AC008065.1-201ENST00000428525 348 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AP001324.1-201ENST00000428553 399 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 RPL5P2-201ENST00000429598 854 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC6.69□□□□□ -1.34
HMGB1P09429 HMGB3P24-201ENST00000433260 622 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 DNAJA1P5-201ENST00000440278 943 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC6.69□□□□□ -1.34
HMGB1P09429 HLA-DPA3-207ENST00000454398 229 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AC083899.1-201ENST00000454465 3819 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC6.69□□□□□ -1.34
HMGB1P09429 AC015908.1-201ENST00000478739 476 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.69□□□□□ -1.34
HMGB1P09429 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.69□□□□□ -1.34
HMGB1P09429 PRELID3BP4-201ENST00000515476 571 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 RN7SKP253-201ENST00000516424 309 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 SEPT10P1-201ENST00000517342 1162 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AC079600.1-201ENST00000550326 297 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC6.69□□□□□ -1.34
HMGB1P09429 HYKK-203ENST00000563233 734 ntTSL 2 BASIC6.69□□□□□ -1.34
HMGB1P09429 DPPA2P4-201ENST00000563717 878 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 AL121890.3-201ENST00000618494 516 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.69□□□□□ -1.34
HMGB1P09429 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.69□□□□□ -1.34
HMGB1P09429 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
HMGB1P09429 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
HMGB1P09429 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms