Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 KRT16P1-201ENST00000399124 1418 ntBASIC19.7■□□□□ 0.74
LHX3Q9UBR4 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LHX3Q9UBR4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.69■□□□□ 0.74
LHX3Q9UBR4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.69■□□□□ 0.74
LHX3Q9UBR4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 AC004980.1-204ENST00000429707 299 ntBASIC19.68■□□□□ 0.74
LHX3Q9UBR4 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.68■□□□□ 0.74
LHX3Q9UBR4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LHX3Q9UBR4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 LINC01465-201ENST00000408887 1940 ntBASIC19.67■□□□□ 0.74
LHX3Q9UBR4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.67■□□□□ 0.74
LHX3Q9UBR4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 AL158211.5-201ENST00000623583 2518 ntBASIC19.66■□□□□ 0.74
LHX3Q9UBR4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
LHX3Q9UBR4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms