Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 RNA5SP413-201ENST00000516373 109 ntBASIC19.46■□□□□ 0.71
TREX1Q9NSU2 AP003097.1-201ENST00000530657 1135 ntBASIC19.46■□□□□ 0.71
TREX1Q9NSU2 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.46■□□□□ 0.71
TREX1Q9NSU2 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TREX1Q9NSU2 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TREX1Q9NSU2 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 TEX21P-204ENST00000641479 1693 ntBASIC19.44■□□□□ 0.7
TREX1Q9NSU2 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 TUBB8P6-201ENST00000436895 1288 ntBASIC19.44■□□□□ 0.7
TREX1Q9NSU2 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TREX1Q9NSU2 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 SDHAP1-207ENST00000440850 2000 ntBASIC19.43■□□□□ 0.7
TREX1Q9NSU2 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 AC026366.1-201ENST00000488803 879 ntBASIC19.43■□□□□ 0.7
TREX1Q9NSU2 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.43■□□□□ 0.7
TREX1Q9NSU2 KRT18P6-201ENST00000555540 1265 ntBASIC19.43■□□□□ 0.7
TREX1Q9NSU2 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms