Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 BX119927.1-201ENST00000636596 1552 ntBASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
VCX3AQ9NNX9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.21■□□□□ 0.5
VCX3AQ9NNX9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 AC010525.1-201ENST00000585559 441 ntBASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.2■□□□□ 0.5
VCX3AQ9NNX9 SIRPAP1-201ENST00000448467 1770 ntBASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 MIR3181-201ENST00000578512 73 ntBASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 AC067852.2-201ENST00000590513 2313 ntBASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 AL031848.2-201ENST00000607670 837 ntBASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 AP004607.4-201ENST00000530158 1459 ntBASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VCX3AQ9NNX9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 AP005435.1-201ENST00000529293 1178 ntBASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 MIR2861-201ENST00000636310 90 ntBASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCX3AQ9NNX9 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 ATP5G2P3-201ENST00000429083 425 ntBASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCX3AQ9NNX9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms