Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TIMP4Q99727 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TIMP4Q99727 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.89■□□□□ 0.46
TIMP4Q99727 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.46
TIMP4Q99727 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC17.89■□□□□ 0.45
TIMP4Q99727 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.89■□□□□ 0.45
TIMP4Q99727 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.89■□□□□ 0.45
TIMP4Q99727 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
TIMP4Q99727 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TIMP4Q99727 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
TIMP4Q99727 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 AC233702.5-201ENST00000584107 538 ntBASIC17.89■□□□□ 0.45
TIMP4Q99727 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.89■□□□□ 0.45
TIMP4Q99727 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.89■□□□□ 0.45
TIMP4Q99727 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.89■□□□□ 0.45
TIMP4Q99727 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TIMP4Q99727 AL135905.2-201ENST00000584934 1404 ntBASIC17.89■□□□□ 0.45
TIMP4Q99727 NBPF21P-201ENST00000425093 1451 ntBASIC17.88■□□□□ 0.45
TIMP4Q99727 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.88■□□□□ 0.45
TIMP4Q99727 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.88■□□□□ 0.45
TIMP4Q99727 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.88■□□□□ 0.45
TIMP4Q99727 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
TIMP4Q99727 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
TIMP4Q99727 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.88■□□□□ 0.45
TIMP4Q99727 RARRES2P10-201ENST00000564312 460 ntBASIC17.88■□□□□ 0.45
TIMP4Q99727 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.88■□□□□ 0.45
TIMP4Q99727 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.88■□□□□ 0.45
TIMP4Q99727 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TIMP4Q99727 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.88■□□□□ 0.45
TIMP4Q99727 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
TIMP4Q99727 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TIMP4Q99727 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TIMP4Q99727 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.88■□□□□ 0.45
TIMP4Q99727 TNXA-203ENST00000507684 2038 ntBASIC17.88■□□□□ 0.45
TIMP4Q99727 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.87■□□□□ 0.45
TIMP4Q99727 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
TIMP4Q99727 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.87■□□□□ 0.45
TIMP4Q99727 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.87■□□□□ 0.45
TIMP4Q99727 SNORA78-201ENST00000459373 127 ntBASIC17.87■□□□□ 0.45
TIMP4Q99727 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
TIMP4Q99727 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.87■□□□□ 0.45
TIMP4Q99727 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.87■□□□□ 0.45
TIMP4Q99727 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.87■□□□□ 0.45
TIMP4Q99727 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.87■□□□□ 0.45
TIMP4Q99727 AP001412.1-201ENST00000608405 714 ntBASIC17.87■□□□□ 0.45
TIMP4Q99727 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
TIMP4Q99727 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TIMP4Q99727 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.87■□□□□ 0.45
TIMP4Q99727 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.87■□□□□ 0.45
TIMP4Q99727 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
TIMP4Q99727 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TIMP4Q99727 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms