Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 GCSHP2-201ENST00000560971 527 ntBASIC19.19■□□□□ 0.66
CFAP54Q96N23 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.19■□□□□ 0.66
CFAP54Q96N23 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CFAP54Q96N23 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CFAP54Q96N23 AC016734.2-201ENST00000624325 1377 ntBASIC19.19■□□□□ 0.66
CFAP54Q96N23 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CFAP54Q96N23 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.19■□□□□ 0.66
CFAP54Q96N23 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CFAP54Q96N23 KRT16P4-201ENST00000453883 522 ntBASIC19.19■□□□□ 0.66
CFAP54Q96N23 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.19■□□□□ 0.66
CFAP54Q96N23 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.19■□□□□ 0.66
CFAP54Q96N23 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.19■□□□□ 0.66
CFAP54Q96N23 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.19■□□□□ 0.66
CFAP54Q96N23 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 AC055717.3-201ENST00000622967 595 ntBASIC19.18■□□□□ 0.66
CFAP54Q96N23 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CFAP54Q96N23 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.18■□□□□ 0.66
CFAP54Q96N23 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.18■□□□□ 0.66
CFAP54Q96N23 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CFAP54Q96N23 NUS1P1-201ENST00000446295 882 ntBASIC19.17■□□□□ 0.66
CFAP54Q96N23 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CFAP54Q96N23 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.17■□□□□ 0.66
CFAP54Q96N23 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CFAP54Q96N23 AP000523.1-201ENST00000398242 1049 ntBASIC19.17■□□□□ 0.66
CFAP54Q96N23 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CFAP54Q96N23 AL645929.1-201ENST00000420084 975 ntBASIC19.17■□□□□ 0.66
CFAP54Q96N23 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.17■□□□□ 0.66
CFAP54Q96N23 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CFAP54Q96N23 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
CFAP54Q96N23 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CFAP54Q96N23 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CFAP54Q96N23 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.17■□□□□ 0.66
CFAP54Q96N23 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.17■□□□□ 0.66
CFAP54Q96N23 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.17■□□□□ 0.66
CFAP54Q96N23 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CFAP54Q96N23 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.16■□□□□ 0.66
CFAP54Q96N23 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
CFAP54Q96N23 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CFAP54Q96N23 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CFAP54Q96N23 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CFAP54Q96N23 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CFAP54Q96N23 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 AC140113.2-201ENST00000604370 208 ntBASIC19.16■□□□□ 0.66
CFAP54Q96N23 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CFAP54Q96N23 AC005104.2-201ENST00000427818 678 ntBASIC19.16■□□□□ 0.66
CFAP54Q96N23 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CFAP54Q96N23 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CFAP54Q96N23 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 HLA-J-202ENST00000469281 1241 ntBASIC19.15■□□□□ 0.66
CFAP54Q96N23 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CFAP54Q96N23 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CFAP54Q96N23 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CFAP54Q96N23 HBZP1-201ENST00000354915 429 ntBASIC19.14■□□□□ 0.66
CFAP54Q96N23 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.14■□□□□ 0.66
CFAP54Q96N23 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.66
CFAP54Q96N23 MIR3197-201ENST00000582241 73 ntBASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms