Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 MTDHP1-201ENST00000605323 784 ntBASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CCDC65Q8IXS2 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC65Q8IXS2 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.64■■□□□ 1.06
CCDC65Q8IXS2 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.64■■□□□ 1.06
CCDC65Q8IXS2 KRT8P8-201ENST00000434750 1448 ntBASIC21.64■■□□□ 1.06
CCDC65Q8IXS2 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC65Q8IXS2 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
CCDC65Q8IXS2 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC65Q8IXS2 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC65Q8IXS2 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 TUBB8P6-201ENST00000436895 1288 ntBASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 AC233263.1-201ENST00000578059 224 ntBASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC65Q8IXS2 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 NBPF21P-201ENST00000425093 1451 ntBASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC65Q8IXS2 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 AC007952.6-201ENST00000573168 2673 ntBASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 AC003957.1-201ENST00000625108 2673 ntBASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
CCDC65Q8IXS2 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.61■■□□□ 1.05
CCDC65Q8IXS2 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC65Q8IXS2 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC65Q8IXS2 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC65Q8IXS2 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC65Q8IXS2 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.61■■□□□ 1.05
CCDC65Q8IXS2 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
CCDC65Q8IXS2 Z82202.1-201ENST00000623446 1880 ntBASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms