Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC126763.1-201ENST00000552015 2118 ntBASIC12.22□□□□□ -0.45
LINC00643Q86TS7 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 CHST11-202ENST00000546689 756 ntTSL 2 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 RARRES2P7-201ENST00000567349 469 ntBASIC12.22□□□□□ -0.45
LINC00643Q86TS7 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 GNAS-203ENST00000306120 1878 ntBASIC12.22□□□□□ -0.45
LINC00643Q86TS7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 AC006333.2-201ENST00000607957 2099 ntBASIC12.22□□□□□ -0.45
LINC00643Q86TS7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
LINC00643Q86TS7 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 AC003102.1-202ENST00000563394 1796 ntBASIC12.21□□□□□ -0.45
LINC00643Q86TS7 Z98044.1-201ENST00000632503 1764 ntBASIC12.21□□□□□ -0.45
LINC00643Q86TS7 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 BOC-212ENST00000485230 2173 ntTSL 2 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
LINC00643Q86TS7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
LINC00643Q86TS7 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 AL031598.1-201ENST00000561511 1773 ntBASIC12.2□□□□□ -0.46
LINC00643Q86TS7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
LINC00643Q86TS7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC12.2□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms