Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.87■□□□□ 0.93
VCPP55072 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.87■□□□□ 0.93
VCPP55072 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.87■□□□□ 0.93
VCPP55072 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.87■□□□□ 0.93
VCPP55072 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.87■□□□□ 0.93
VCPP55072 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.87■□□□□ 0.93
VCPP55072 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
VCPP55072 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.87■□□□□ 0.93
VCPP55072 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.87■□□□□ 0.93
VCPP55072 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.87■□□□□ 0.93
VCPP55072 AF186192.3-201ENST00000583427 947 ntBASIC20.87■□□□□ 0.93
VCPP55072 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.87■□□□□ 0.93
VCPP55072 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
VCPP55072 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.87■□□□□ 0.93
VCPP55072 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.87■□□□□ 0.93
VCPP55072 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.87■□□□□ 0.93
VCPP55072 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.86■□□□□ 0.93
VCPP55072 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.86■□□□□ 0.93
VCPP55072 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VCPP55072 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 FAM197Y1-201ENST00000421178 764 ntBASIC20.86■□□□□ 0.93
VCPP55072 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.86■□□□□ 0.93
VCPP55072 AL137013.1-201ENST00000432946 1228 ntBASIC20.86■□□□□ 0.93
VCPP55072 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.86■□□□□ 0.93
VCPP55072 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
VCPP55072 RBM17P1-201ENST00000453646 1190 ntBASIC20.86■□□□□ 0.93
VCPP55072 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.86■□□□□ 0.93
VCPP55072 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.86■□□□□ 0.93
VCPP55072 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
VCPP55072 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 AC079598.2-202ENST00000546624 1451 ntBASIC20.86■□□□□ 0.93
VCPP55072 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.86■□□□□ 0.93
VCPP55072 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
VCPP55072 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VCPP55072 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.86■□□□□ 0.93
VCPP55072 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.85■□□□□ 0.93
VCPP55072 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
VCPP55072 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.85■□□□□ 0.93
VCPP55072 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.85■□□□□ 0.93
VCPP55072 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
VCPP55072 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.85■□□□□ 0.93
VCPP55072 AC104076.2-201ENST00000448912 469 ntBASIC20.85■□□□□ 0.93
VCPP55072 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.85■□□□□ 0.93
VCPP55072 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
VCPP55072 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
VCPP55072 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
VCPP55072 AC005829.2-201ENST00000571422 1056 ntBASIC20.85■□□□□ 0.93
VCPP55072 AP000525.1-201ENST00000608286 694 ntBASIC20.85■□□□□ 0.93
VCPP55072 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 AC073508.3-201ENST00000619697 1419 ntBASIC20.85■□□□□ 0.93
VCPP55072 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.85■□□□□ 0.93
VCPP55072 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
VCPP55072 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
VCPP55072 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
VCPP55072 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VCPP55072 AC007952.6-201ENST00000573168 2673 ntBASIC20.84■□□□□ 0.93
VCPP55072 AC003957.1-201ENST00000625108 2673 ntBASIC20.84■□□□□ 0.93
VCPP55072 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VCPP55072 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VCPP55072 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VCPP55072 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.84■□□□□ 0.93
VCPP55072 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VCPP55072 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
VCPP55072 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.84■□□□□ 0.93
VCPP55072 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.84■□□□□ 0.93
VCPP55072 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VCPP55072 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VCPP55072 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms