Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX1P48742 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
LHX1P48742 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX1P48742 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LHX1P48742 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LHX1P48742 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LHX1P48742 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LHX1P48742 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX1P48742 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX1P48742 TSPY15P-201ENST00000457163 923 ntBASIC20.69■□□□□ 0.9
LHX1P48742 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.69■□□□□ 0.9
LHX1P48742 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
LHX1P48742 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX1P48742 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LHX1P48742 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX1P48742 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
LHX1P48742 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LHX1P48742 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LHX1P48742 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LHX1P48742 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LHX1P48742 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
LHX1P48742 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
LHX1P48742 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LHX1P48742 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.69■□□□□ 0.9
LHX1P48742 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
LHX1P48742 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 UNC93B2-201ENST00000285383 730 ntBASIC20.68■□□□□ 0.9
LHX1P48742 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.68■□□□□ 0.9
LHX1P48742 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LHX1P48742 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.68■□□□□ 0.9
LHX1P48742 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.68■□□□□ 0.9
LHX1P48742 MIR6786-201ENST00000616843 113 ntBASIC20.68■□□□□ 0.9
LHX1P48742 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LHX1P48742 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.68■□□□□ 0.9
LHX1P48742 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
LHX1P48742 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.68■□□□□ 0.9
LHX1P48742 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LHX1P48742 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.67■□□□□ 0.9
LHX1P48742 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 RBM17P1-201ENST00000453646 1190 ntBASIC20.67■□□□□ 0.9
LHX1P48742 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 AL160286.2-201ENST00000567150 934 ntBASIC20.67■□□□□ 0.9
LHX1P48742 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.67■□□□□ 0.9
LHX1P48742 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.67■□□□□ 0.9
LHX1P48742 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.67■□□□□ 0.9
LHX1P48742 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
LHX1P48742 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.67■□□□□ 0.9
LHX1P48742 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.67■□□□□ 0.9
LHX1P48742 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.67■□□□□ 0.9
LHX1P48742 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.67■□□□□ 0.9
LHX1P48742 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LHX1P48742 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LHX1P48742 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
LHX1P48742 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
LHX1P48742 MESTP1-201ENST00000404287 994 ntBASIC20.66■□□□□ 0.9
LHX1P48742 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.66■□□□□ 0.9
LHX1P48742 B3GAT3P1-201ENST00000471720 806 ntBASIC20.66■□□□□ 0.9
LHX1P48742 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
LHX1P48742 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.66■□□□□ 0.9
LHX1P48742 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.66■□□□□ 0.9
LHX1P48742 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.66■□□□□ 0.9
LHX1P48742 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.66■□□□□ 0.9
LHX1P48742 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LHX1P48742 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.66■□□□□ 0.9
LHX1P48742 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.66■□□□□ 0.9
LHX1P48742 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.66■□□□□ 0.9
LHX1P48742 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LHX1P48742 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms