Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
HNF4AP41235 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.9■□□□□ 0.62
HNF4AP41235 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HNF4AP41235 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.9■□□□□ 0.62
HNF4AP41235 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 AC008403.3-201ENST00000598924 454 ntBASIC18.9■□□□□ 0.62
HNF4AP41235 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.9■□□□□ 0.62
HNF4AP41235 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HNF4AP41235 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.9■□□□□ 0.62
HNF4AP41235 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HNF4AP41235 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.9■□□□□ 0.62
HNF4AP41235 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
HNF4AP41235 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
HNF4AP41235 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.9■□□□□ 0.62
HNF4AP41235 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.9■□□□□ 0.62
HNF4AP41235 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.9■□□□□ 0.62
HNF4AP41235 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HNF4AP41235 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
HNF4AP41235 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.89■□□□□ 0.62
HNF4AP41235 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
HNF4AP41235 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.89■□□□□ 0.62
HNF4AP41235 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
HNF4AP41235 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
HNF4AP41235 AC093484.2-201ENST00000580996 2166 ntBASIC18.89■□□□□ 0.62
HNF4AP41235 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HNF4AP41235 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HNF4AP41235 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HNF4AP41235 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.89■□□□□ 0.61
HNF4AP41235 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HNF4AP41235 AC026366.1-201ENST00000488803 879 ntBASIC18.89■□□□□ 0.61
HNF4AP41235 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.89■□□□□ 0.61
HNF4AP41235 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.89■□□□□ 0.61
HNF4AP41235 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.89■□□□□ 0.61
HNF4AP41235 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.89■□□□□ 0.61
HNF4AP41235 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.89■□□□□ 0.61
HNF4AP41235 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.89■□□□□ 0.61
HNF4AP41235 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
HNF4AP41235 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HNF4AP41235 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HNF4AP41235 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HNF4AP41235 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HNF4AP41235 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HNF4AP41235 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HNF4AP41235 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.88■□□□□ 0.61
HNF4AP41235 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.88■□□□□ 0.61
HNF4AP41235 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
HNF4AP41235 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
HNF4AP41235 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.88■□□□□ 0.61
HNF4AP41235 TSPY20P-201ENST00000450910 630 ntBASIC18.88■□□□□ 0.61
HNF4AP41235 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.88■□□□□ 0.61
HNF4AP41235 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HNF4AP41235 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HNF4AP41235 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HNF4AP41235 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HNF4AP41235 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HNF4AP41235 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HNF4AP41235 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HNF4AP41235 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
HNF4AP41235 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
HNF4AP41235 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
HNF4AP41235 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
HNF4AP41235 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HNF4AP41235 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
HNF4AP41235 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.87■□□□□ 0.61
HNF4AP41235 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.87■□□□□ 0.61
HNF4AP41235 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.87■□□□□ 0.61
HNF4AP41235 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
HNF4AP41235 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HNF4AP41235 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 AC005332.7-201ENST00000614046 2005 ntBASIC18.86■□□□□ 0.61
HNF4AP41235 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 POM121L13P-201ENST00000422362 380 ntBASIC18.86■□□□□ 0.61
HNF4AP41235 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.86■□□□□ 0.61
HNF4AP41235 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
HNF4AP41235 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.86■□□□□ 0.61
HNF4AP41235 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HNF4AP41235 AL121829.2-201ENST00000620908 328 ntBASIC18.86■□□□□ 0.61
HNF4AP41235 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms