Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC25.9■■□□□ 1.74
COL18A1P39060 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
COL18A1P39060 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC25.9■■□□□ 1.74
COL18A1P39060 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
COL18A1P39060 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
COL18A1P39060 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC25.89■■□□□ 1.74
COL18A1P39060 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
COL18A1P39060 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
COL18A1P39060 ILF2-202ENST00000368681 726 ntTSL 2 BASIC25.89■■□□□ 1.73
COL18A1P39060 FXN-203ENST00000396366 922 ntTSL 2 BASIC25.89■■□□□ 1.73
COL18A1P39060 TSPY21P-201ENST00000433481 731 ntBASIC25.89■■□□□ 1.73
COL18A1P39060 TSPY23P-201ENST00000440136 739 ntBASIC25.89■■□□□ 1.73
COL18A1P39060 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
COL18A1P39060 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC25.89■■□□□ 1.73
COL18A1P39060 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC25.89■■□□□ 1.73
COL18A1P39060 CLN6-214ENST00000636314 442 ntTSL 3 BASIC25.89■■□□□ 1.73
COL18A1P39060 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
COL18A1P39060 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
COL18A1P39060 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
COL18A1P39060 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC25.89■■□□□ 1.73
COL18A1P39060 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL18A1P39060 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
COL18A1P39060 KRT8P11-201ENST00000409686 1436 ntBASIC25.88■■□□□ 1.73
COL18A1P39060 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL18A1P39060 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL18A1P39060 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC25.88■■□□□ 1.73
COL18A1P39060 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC25.88■■□□□ 1.73
COL18A1P39060 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC25.88■■□□□ 1.73
COL18A1P39060 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC25.88■■□□□ 1.73
COL18A1P39060 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL18A1P39060 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
COL18A1P39060 Telomerase-vert.1-201ENST00000363312 438 ntBASIC25.87■■□□□ 1.73
COL18A1P39060 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC25.87■■□□□ 1.73
COL18A1P39060 TPM4P1-201ENST00000436100 807 ntBASIC25.87■■□□□ 1.73
COL18A1P39060 AL136038.3-201ENST00000561909 1096 ntBASIC25.87■■□□□ 1.73
COL18A1P39060 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC25.87■■□□□ 1.73
COL18A1P39060 NPAP1P7-201ENST00000613027 823 ntBASIC25.87■■□□□ 1.73
COL18A1P39060 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL18A1P39060 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL18A1P39060 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL18A1P39060 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC25.87■■□□□ 1.73
COL18A1P39060 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC25.87■■□□□ 1.73
COL18A1P39060 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL18A1P39060 AP000523.1-201ENST00000398242 1049 ntBASIC25.87■■□□□ 1.73
COL18A1P39060 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC25.87■■□□□ 1.73
COL18A1P39060 VENTXP5-201ENST00000523979 775 ntBASIC25.87■■□□□ 1.73
COL18A1P39060 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC25.87■■□□□ 1.73
COL18A1P39060 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
COL18A1P39060 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC25.86■■□□□ 1.73
COL18A1P39060 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC25.86■■□□□ 1.73
COL18A1P39060 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
COL18A1P39060 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL18A1P39060 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL18A1P39060 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL18A1P39060 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL18A1P39060 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
COL18A1P39060 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC25.86■■□□□ 1.73
COL18A1P39060 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC25.86■■□□□ 1.73
COL18A1P39060 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC25.86■■□□□ 1.73
COL18A1P39060 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
COL18A1P39060 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC25.86■■□□□ 1.73
COL18A1P39060 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC25.86■■□□□ 1.73
COL18A1P39060 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
COL18A1P39060 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
COL18A1P39060 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC25.85■■□□□ 1.73
COL18A1P39060 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
COL18A1P39060 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL18A1P39060 AC079834.2-201ENST00000609776 1949 ntBASIC25.85■■□□□ 1.73
COL18A1P39060 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
COL18A1P39060 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
COL18A1P39060 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC25.85■■□□□ 1.73
COL18A1P39060 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC25.85■■□□□ 1.73
COL18A1P39060 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
COL18A1P39060 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL18A1P39060 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC25.84■■□□□ 1.73
COL18A1P39060 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC25.84■■□□□ 1.73
COL18A1P39060 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC25.84■■□□□ 1.73
COL18A1P39060 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC25.84■■□□□ 1.73
COL18A1P39060 AL031432.5-201ENST00000641059 760 ntBASIC25.84■■□□□ 1.73
COL18A1P39060 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL18A1P39060 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC25.84■■□□□ 1.73
COL18A1P39060 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL18A1P39060 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC25.84■■□□□ 1.73
COL18A1P39060 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
COL18A1P39060 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL18A1P39060 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL18A1P39060 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC25.84■■□□□ 1.73
COL18A1P39060 PHB2-202ENST00000440277 996 ntTSL 5 BASIC25.84■■□□□ 1.73
COL18A1P39060 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC25.84■■□□□ 1.73
COL18A1P39060 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
COL18A1P39060 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC25.84■■□□□ 1.73
COL18A1P39060 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
COL18A1P39060 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL18A1P39060 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL18A1P39060 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
COL18A1P39060 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
COL18A1P39060 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
COL18A1P39060 ATP5G2P1-201ENST00000433580 426 ntBASIC25.83■■□□□ 1.73
COL18A1P39060 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC25.83■■□□□ 1.73
COL18A1P39060 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms