Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CXCL1P09341 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.11■□□□□ 0.01
CXCL1P09341 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
CXCL1P09341 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CXCL1P09341 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CXCL1P09341 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CXCL1P09341 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.1■□□□□ 0.01
CXCL1P09341 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL1P09341 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CXCL1P09341 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
CXCL1P09341 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CXCL1P09341 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL1P09341 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
CXCL1P09341 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL1P09341 AICDA-202ENST00000537228 667 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL1P09341 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CXCL1P09341 AC053503.5-201ENST00000601508 636 ntBASIC15.1■□□□□ 0.01
CXCL1P09341 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL1P09341 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CXCL1P09341 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.1■□□□□ 0.01
CXCL1P09341 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.1■□□□□ 0.01
CXCL1P09341 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CXCL1P09341 AL161938.1-201ENST00000569833 2180 ntBASIC15.09■□□□□ 0.01
CXCL1P09341 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.09■□□□□ 0.01
CXCL1P09341 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CXCL1P09341 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
CXCL1P09341 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CXCL1P09341 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC15.09■□□□□ 0.01
CXCL1P09341 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CXCL1P09341 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC15.09■□□□□ 0.01
CXCL1P09341 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 EEF1DP3-203ENST00000566025 782 ntBASIC15.09■□□□□ 0.01
CXCL1P09341 AL035685.1-201ENST00000636663 812 ntBASIC15.09■□□□□ 0.01
CXCL1P09341 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CXCL1P09341 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
CXCL1P09341 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL1P09341 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CXCL1P09341 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CXCL1P09341 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CXCL1P09341 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CXCL1P09341 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.09■□□□□ 0.01
CXCL1P09341 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL1P09341 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL1P09341 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
CXCL1P09341 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
CXCL1P09341 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.08■□□□□ 0.01
CXCL1P09341 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CXCL1P09341 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.08■□□□□ 0.01
CXCL1P09341 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CXCL1P09341 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CXCL1P09341 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL1P09341 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL1P09341 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL1P09341 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL1P09341 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.08■□□□□ 0
CXCL1P09341 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC15.08■□□□□ 0
CXCL1P09341 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC15.08■□□□□ 0
CXCL1P09341 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL1P09341 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms