Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VIMP08670 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.58■□□□□ 0.73
VIMP08670 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VIMP08670 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VIMP08670 AC138907.5-202ENST00000569484 235 ntBASIC19.58■□□□□ 0.72
VIMP08670 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
VIMP08670 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
VIMP08670 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VIMP08670 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VIMP08670 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VIMP08670 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VIMP08670 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VIMP08670 WIZP1-201ENST00000531444 2299 ntBASIC19.58■□□□□ 0.72
VIMP08670 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.58■□□□□ 0.72
VIMP08670 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
VIMP08670 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.57■□□□□ 0.72
VIMP08670 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VIMP08670 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.57■□□□□ 0.72
VIMP08670 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VIMP08670 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VIMP08670 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VIMP08670 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VIMP08670 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
VIMP08670 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.56■□□□□ 0.72
VIMP08670 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VIMP08670 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
VIMP08670 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
VIMP08670 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.56■□□□□ 0.72
VIMP08670 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.56■□□□□ 0.72
VIMP08670 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.56■□□□□ 0.72
VIMP08670 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.56■□□□□ 0.72
VIMP08670 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
VIMP08670 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VIMP08670 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 AP000997.3-201ENST00000623333 2250 ntBASIC19.55■□□□□ 0.72
VIMP08670 KRT87P-202ENST00000534226 1464 ntBASIC19.55■□□□□ 0.72
VIMP08670 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
VIMP08670 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.55■□□□□ 0.72
VIMP08670 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.55■□□□□ 0.72
VIMP08670 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.55■□□□□ 0.72
VIMP08670 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.55■□□□□ 0.72
VIMP08670 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.55■□□□□ 0.72
VIMP08670 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
VIMP08670 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 AP001271.2-201ENST00000624018 1556 ntBASIC19.55■□□□□ 0.72
VIMP08670 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VIMP08670 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
VIMP08670 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VIMP08670 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VIMP08670 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VIMP08670 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.54■□□□□ 0.72
VIMP08670 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.54■□□□□ 0.72
VIMP08670 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VIMP08670 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VIMP08670 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VIMP08670 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VIMP08670 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VIMP08670 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VIMP08670 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
VIMP08670 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.54■□□□□ 0.72
VIMP08670 AC008764.7-201ENST00000593779 1081 ntBASIC19.54■□□□□ 0.72
VIMP08670 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.54■□□□□ 0.72
VIMP08670 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.54■□□□□ 0.72
VIMP08670 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VIMP08670 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VIMP08670 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VIMP08670 PKD1P1-201ENST00000458669 6805 ntBASIC19.54■□□□□ 0.72
VIMP08670 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
VIMP08670 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.54■□□□□ 0.72
VIMP08670 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.54■□□□□ 0.72
VIMP08670 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VIMP08670 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms