Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC24.67■■□□□ 1.54
CACNA1FO60840 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CACNA1FO60840 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CACNA1FO60840 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC24.67■■□□□ 1.54
CACNA1FO60840 RBM17P1-201ENST00000453646 1190 ntBASIC24.67■■□□□ 1.54
CACNA1FO60840 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC24.67■■□□□ 1.54
CACNA1FO60840 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC24.67■■□□□ 1.54
CACNA1FO60840 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC24.67■■□□□ 1.54
CACNA1FO60840 AC079598.2-202ENST00000546624 1451 ntBASIC24.67■■□□□ 1.54
CACNA1FO60840 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CACNA1FO60840 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC24.66■■□□□ 1.54
CACNA1FO60840 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CACNA1FO60840 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
CACNA1FO60840 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CACNA1FO60840 GXYLT1P3-201ENST00000453058 1193 ntBASIC24.66■■□□□ 1.54
CACNA1FO60840 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC24.66■■□□□ 1.54
CACNA1FO60840 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC24.66■■□□□ 1.54
CACNA1FO60840 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CACNA1FO60840 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CACNA1FO60840 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC24.66■■□□□ 1.54
CACNA1FO60840 ANKRD18DP-204ENST00000455355 1975 ntBASIC24.66■■□□□ 1.54
CACNA1FO60840 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CACNA1FO60840 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC24.66■■□□□ 1.54
CACNA1FO60840 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
CACNA1FO60840 AC073130.3-201ENST00000624389 2278 ntBASIC24.66■■□□□ 1.54
CACNA1FO60840 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CACNA1FO60840 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CACNA1FO60840 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC24.65■■□□□ 1.54
CACNA1FO60840 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CACNA1FO60840 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC24.65■■□□□ 1.54
CACNA1FO60840 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC24.65■■□□□ 1.54
CACNA1FO60840 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CACNA1FO60840 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC24.65■■□□□ 1.54
CACNA1FO60840 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
CACNA1FO60840 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC24.65■■□□□ 1.54
CACNA1FO60840 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC24.65■■□□□ 1.54
CACNA1FO60840 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC24.65■■□□□ 1.54
CACNA1FO60840 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
CACNA1FO60840 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC24.65■■□□□ 1.54
CACNA1FO60840 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC24.65■■□□□ 1.54
CACNA1FO60840 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CACNA1FO60840 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CACNA1FO60840 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CACNA1FO60840 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC24.65■■□□□ 1.54
CACNA1FO60840 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC24.65■■□□□ 1.54
CACNA1FO60840 AC073912.3-201ENST00000624414 853 ntBASIC24.65■■□□□ 1.54
CACNA1FO60840 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC24.64■■□□□ 1.54
CACNA1FO60840 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CACNA1FO60840 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CACNA1FO60840 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CACNA1FO60840 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC24.64■■□□□ 1.54
CACNA1FO60840 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC24.64■■□□□ 1.54
CACNA1FO60840 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CACNA1FO60840 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CACNA1FO60840 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC24.63■■□□□ 1.53
CACNA1FO60840 AL355355.2-201ENST00000442321 338 ntBASIC24.63■■□□□ 1.53
CACNA1FO60840 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC24.63■■□□□ 1.53
CACNA1FO60840 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
CACNA1FO60840 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CACNA1FO60840 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC24.63■■□□□ 1.53
CACNA1FO60840 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
CACNA1FO60840 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CACNA1FO60840 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CACNA1FO60840 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1FO60840 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC24.62■■□□□ 1.53
CACNA1FO60840 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1FO60840 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1FO60840 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC24.62■■□□□ 1.53
CACNA1FO60840 FAM207BP-201ENST00000447172 505 ntBASIC24.62■■□□□ 1.53
CACNA1FO60840 AC091390.4-202ENST00000476426 537 ntBASIC24.62■■□□□ 1.53
CACNA1FO60840 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1FO60840 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC24.62■■□□□ 1.53
CACNA1FO60840 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1FO60840 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.62■■□□□ 1.53
CACNA1FO60840 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1FO60840 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC24.62■■□□□ 1.53
CACNA1FO60840 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC24.62■■□□□ 1.53
CACNA1FO60840 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC24.62■■□□□ 1.53
CACNA1FO60840 GLDC-219ENST00000640208 420 ntTSL 2 BASIC24.62■■□□□ 1.53
CACNA1FO60840 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CACNA1FO60840 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC24.62■■□□□ 1.53
CACNA1FO60840 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC24.61■■□□□ 1.53
CACNA1FO60840 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC24.61■■□□□ 1.53
CACNA1FO60840 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC24.61■■□□□ 1.53
CACNA1FO60840 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CACNA1FO60840 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms