Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PROM1O43490 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
PROM1O43490 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
PROM1O43490 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.52■□□□□ 0.55
PROM1O43490 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.52■□□□□ 0.55
PROM1O43490 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PROM1O43490 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PROM1O43490 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 POU5F1P3-201ENST00000428824 1078 ntBASIC18.51■□□□□ 0.55
PROM1O43490 YBX1P10-201ENST00000444752 975 ntBASIC18.51■□□□□ 0.55
PROM1O43490 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.51■□□□□ 0.55
PROM1O43490 PRKY-204ENST00000533551 1019 ntBASIC18.51■□□□□ 0.55
PROM1O43490 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.51■□□□□ 0.55
PROM1O43490 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
PROM1O43490 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
PROM1O43490 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.51■□□□□ 0.55
PROM1O43490 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.51■□□□□ 0.55
PROM1O43490 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PROM1O43490 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.5■□□□□ 0.55
PROM1O43490 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PROM1O43490 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.5■□□□□ 0.55
PROM1O43490 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PROM1O43490 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PROM1O43490 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.5■□□□□ 0.55
PROM1O43490 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.5■□□□□ 0.55
PROM1O43490 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.5■□□□□ 0.55
PROM1O43490 AC006058.3-201ENST00000606217 1069 ntBASIC18.5■□□□□ 0.55
PROM1O43490 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.5■□□□□ 0.55
PROM1O43490 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
PROM1O43490 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PROM1O43490 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.5■□□□□ 0.55
PROM1O43490 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.5■□□□□ 0.55
PROM1O43490 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.49■□□□□ 0.55
PROM1O43490 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
PROM1O43490 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
PROM1O43490 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.49■□□□□ 0.55
PROM1O43490 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.49■□□□□ 0.55
PROM1O43490 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.49■□□□□ 0.55
PROM1O43490 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.49■□□□□ 0.55
PROM1O43490 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.49■□□□□ 0.55
PROM1O43490 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.49■□□□□ 0.55
PROM1O43490 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.49■□□□□ 0.55
PROM1O43490 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.49■□□□□ 0.55
PROM1O43490 AC073648.6-201ENST00000641589 218 ntBASIC18.49■□□□□ 0.55
PROM1O43490 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.49■□□□□ 0.55
PROM1O43490 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
PROM1O43490 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PROM1O43490 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
PROM1O43490 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.49■□□□□ 0.55
PROM1O43490 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PROM1O43490 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PROM1O43490 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PROM1O43490 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PROM1O43490 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PROM1O43490 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PROM1O43490 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PROM1O43490 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
PROM1O43490 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.48■□□□□ 0.55
PROM1O43490 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.48■□□□□ 0.55
PROM1O43490 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PROM1O43490 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PROM1O43490 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms