Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
MSH4O15457 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.96■■□□□ 1.11
MSH4O15457 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.96■■□□□ 1.11
MSH4O15457 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.96■■□□□ 1.11
MSH4O15457 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.96■■□□□ 1.11
MSH4O15457 AC026471.5-201ENST00000615068 467 ntBASIC21.96■■□□□ 1.11
MSH4O15457 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.96■■□□□ 1.11
MSH4O15457 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.96■■□□□ 1.11
MSH4O15457 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
MSH4O15457 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
MSH4O15457 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
MSH4O15457 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH4O15457 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
MSH4O15457 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
MSH4O15457 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.95■■□□□ 1.1
MSH4O15457 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH4O15457 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH4O15457 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
MSH4O15457 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH4O15457 AC004980.1-204ENST00000429707 299 ntBASIC21.95■■□□□ 1.1
MSH4O15457 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.95■■□□□ 1.1
MSH4O15457 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.95■■□□□ 1.1
MSH4O15457 LINC01465-201ENST00000408887 1940 ntBASIC21.95■■□□□ 1.1
MSH4O15457 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.95■■□□□ 1.1
MSH4O15457 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
MSH4O15457 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
MSH4O15457 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
MSH4O15457 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
MSH4O15457 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH4O15457 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH4O15457 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.94■■□□□ 1.1
MSH4O15457 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
MSH4O15457 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.94■■□□□ 1.1
MSH4O15457 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.94■■□□□ 1.1
MSH4O15457 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
MSH4O15457 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
MSH4O15457 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
MSH4O15457 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.94■■□□□ 1.1
MSH4O15457 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH4O15457 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.94■■□□□ 1.1
MSH4O15457 MIR4785-201ENST00000585005 73 ntBASIC21.94■■□□□ 1.1
MSH4O15457 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.94■■□□□ 1.1
MSH4O15457 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.94■■□□□ 1.1
MSH4O15457 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH4O15457 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH4O15457 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.94■■□□□ 1.1
MSH4O15457 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
MSH4O15457 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.94■■□□□ 1.1
MSH4O15457 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.94■■□□□ 1.1
MSH4O15457 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.94■■□□□ 1.1
MSH4O15457 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MSH4O15457 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.93■■□□□ 1.1
MSH4O15457 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MSH4O15457 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
MSH4O15457 TSPY15P-201ENST00000457163 923 ntBASIC21.93■■□□□ 1.1
MSH4O15457 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MSH4O15457 NUDT16P1-203ENST00000513809 620 ntBASIC21.93■■□□□ 1.1
MSH4O15457 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.93■■□□□ 1.1
MSH4O15457 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.93■■□□□ 1.1
MSH4O15457 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
MSH4O15457 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
MSH4O15457 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.93■■□□□ 1.1
MSH4O15457 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.93■■□□□ 1.1
MSH4O15457 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
MSH4O15457 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
MSH4O15457 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH4O15457 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
MSH4O15457 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 AL355355.2-201ENST00000442321 338 ntBASIC21.92■■□□□ 1.1
MSH4O15457 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.92■■□□□ 1.1
MSH4O15457 AP003071.4-201ENST00000562276 1284 ntBASIC21.92■■□□□ 1.1
MSH4O15457 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.92■■□□□ 1.1
MSH4O15457 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.92■■□□□ 1.1
MSH4O15457 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
MSH4O15457 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
MSH4O15457 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
MSH4O15457 KRT17P2-201ENST00000300992 1314 ntBASIC21.91■■□□□ 1.1
MSH4O15457 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms