Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM38O00635 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM38O00635 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM38O00635 AC023632.3-201ENST00000521633 145 ntBASIC19.62■□□□□ 0.73
TRIM38O00635 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.62■□□□□ 0.73
TRIM38O00635 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM38O00635 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TRIM38O00635 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.62■□□□□ 0.73
TRIM38O00635 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM38O00635 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM38O00635 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM38O00635 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM38O00635 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TRIM38O00635 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM38O00635 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM38O00635 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
TRIM38O00635 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM38O00635 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
TRIM38O00635 AC116562.4-201ENST00000641316 2276 ntBASIC19.62■□□□□ 0.73
TRIM38O00635 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.61■□□□□ 0.73
TRIM38O00635 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 KRT8P36-201ENST00000489121 1440 ntBASIC19.61■□□□□ 0.73
TRIM38O00635 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM38O00635 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.61■□□□□ 0.73
TRIM38O00635 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM38O00635 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
TRIM38O00635 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM38O00635 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRIM38O00635 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TRIM38O00635 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.61■□□□□ 0.73
TRIM38O00635 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.61■□□□□ 0.73
TRIM38O00635 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.61■□□□□ 0.73
TRIM38O00635 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TRIM38O00635 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TRIM38O00635 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM38O00635 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TRIM38O00635 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM38O00635 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM38O00635 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM38O00635 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.6■□□□□ 0.73
TRIM38O00635 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM38O00635 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.6■□□□□ 0.73
TRIM38O00635 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM38O00635 AC026471.5-201ENST00000615068 467 ntBASIC19.6■□□□□ 0.73
TRIM38O00635 MIR2861-201ENST00000636310 90 ntBASIC19.6■□□□□ 0.73
TRIM38O00635 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM38O00635 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM38O00635 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM38O00635 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRIM38O00635 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TRIM38O00635 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.6■□□□□ 0.73
TRIM38O00635 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM38O00635 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRIM38O00635 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
TRIM38O00635 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM38O00635 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM38O00635 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 HTR7P1-201ENST00000538670 1336 ntBASIC19.59■□□□□ 0.73
TRIM38O00635 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
TRIM38O00635 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM38O00635 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM38O00635 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM38O00635 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
TRIM38O00635 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.59■□□□□ 0.73
TRIM38O00635 AF186192.3-201ENST00000583427 947 ntBASIC19.59■□□□□ 0.73
TRIM38O00635 AC012306.2-201ENST00000609350 630 ntBASIC19.59■□□□□ 0.73
TRIM38O00635 AC097493.4-201ENST00000641197 219 ntBASIC19.59■□□□□ 0.73
TRIM38O00635 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
TRIM38O00635 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRIM38O00635 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.59■□□□□ 0.73
TRIM38O00635 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.58■□□□□ 0.73
TRIM38O00635 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
TRIM38O00635 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM38O00635 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.58■□□□□ 0.73
TRIM38O00635 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.58■□□□□ 0.73
TRIM38O00635 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM38O00635 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM38O00635 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM38O00635 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.58■□□□□ 0.73
TRIM38O00635 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
TRIM38O00635 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
TRIM38O00635 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms