Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC15.25■□□□□ 0.03
TRAV1-1A0A0B4J248 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 AC233992.3-201ENST00000607491 485 ntBASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TRAV1-1A0A0B4J248 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 AC139713.2-201ENST00000641328 2723 ntBASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 AC008764.6-201ENST00000595909 2069 ntBASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 AC243732.1-201ENST00000612648 864 ntBASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 AL356652.1-201ENST00000615962 565 ntBASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TRAV1-1A0A0B4J248 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 SIRPAP1-201ENST00000448467 1770 ntBASIC15.22■□□□□ 0.03
TRAV1-1A0A0B4J248 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms