Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AL732372.2-225ENST00000642124 456 ntBASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 KPNA2P1-201ENST00000458289 1591 ntBASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 AC025040.2-201ENST00000558657 1852 ntBASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 LPAR1-202ENST00000374430 2993 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 TMC1-202ENST00000340019 3068 ntAPPRIS P1 TSL 5 BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 AL157831.2-201ENST00000564681 3095 ntBASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 KIDINS220-202ENST00000319688 3765 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 AMD1-201ENST00000368876 3040 ntTSL 5 BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 MAPK10-272ENST00000641110 2724 ntAPPRIS P2 BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 THAP12P1-201ENST00000398672 2203 ntBASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
VPS9D1Q9Y2B5 HPSE2-204ENST00000404542 3681 ntTSL 5 BASIC7.77□□□□□ -1.16
VPS9D1Q9Y2B5 PIWIL2-204ENST00000521356 3488 ntTSL 2 BASIC7.77□□□□□ -1.16
VPS9D1Q9Y2B5 MEF2C-222ENST00000514028 3393 ntTSL 5 BASIC7.77□□□□□ -1.16
VPS9D1Q9Y2B5 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC7.77□□□□□ -1.16
VPS9D1Q9Y2B5 FHL1-204ENST00000370683 2565 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.16
VPS9D1Q9Y2B5 AC127502.2-201ENST00000602663 2351 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 PTPN14-205ENST00000543945 3842 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AURKA-206ENST00000395913 2169 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AL031123.2-201ENST00000563225 3325 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 LINC02282-201ENST00000535153 1655 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 USP37-204ENST00000418019 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 EEF1A1P3-201ENST00000417549 1385 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 UPP2-201ENST00000005756 2224 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 CCDC66-203ENST00000394672 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 IQCA1-206ENST00000431676 3069 ntAPPRIS ALT2 TSL 2 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 RNU4-48P-201ENST00000365559 182 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 SNORA10B-201ENST00000384458 133 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 CES5AP1-201ENST00000400418 859 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AL606923.1-201ENST00000406616 190 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AL672212.1-201ENST00000422246 400 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 RPS3AP38-201ENST00000435889 763 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 GGT3P-203ENST00000445651 368 ntTSL 2 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC234782.3-201ENST00000461229 433 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 TRBV8-2-201ENST00000475637 270 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 FO393415.2-201ENST00000480085 343 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 RN7SL388P-201ENST00000498736 339 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 HMGB1P35-201ENST00000503360 598 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC233724.1-201ENST00000503894 233 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC111198.1-201ENST00000505575 606 ntTSL 4 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 Y_RNA.673-201ENST00000516306 88 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 RNU6-1004P-201ENST00000516584 111 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC084251.1-201ENST00000521867 382 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 IGHV3-76-201ENST00000522465 295 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AP003174.3-201ENST00000537926 516 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 BICD1-206ENST00000551086 423 ntTSL 3 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 CRTC3-AS1-201ENST00000558105 502 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 RN7SL473P-201ENST00000580341 299 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 MIR4682-201ENST00000580643 80 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC006557.4-201ENST00000585516 830 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AL391807.1-201ENST00000603261 712 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AL356052.1-201ENST00000605764 376 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC004792.1-201ENST00000614523 137 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC009237.17-201ENST00000618111 748 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 Metazoa_SRP.42-201ENST00000621081 348 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AC103858.2-201ENST00000621471 543 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 MPP6-209ENST00000625307 126 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 CASC19-260ENST00000641828 2001 ntBASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 UBE2V2-207ENST00000523111 4373 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 GABRB3-225ENST00000638099 2752 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 CYSLTR2-202ENST00000614739 1908 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 KIF11-201ENST00000260731 4860 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 PROM1-210ENST00000510224 4006 ntAPPRIS P3 TSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 OSBPL6-202ENST00000315022 2999 ntTSL 2 BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 PIBF1-208ENST00000617689 2882 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
VPS9D1Q9Y2B5 CCR3-208ENST00000545097 1786 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
VPS9D1Q9Y2B5 AL591543.1-202ENST00000642095 4149 ntBASIC7.76□□□□□ -1.17
VPS9D1Q9Y2B5 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms