Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 AC068533.1-201ENST00000418542 415 ntBASIC4.46□□□□□ -1.7
VPS13AQ96RL7 H2AFZP5-201ENST00000446960 382 ntBASIC4.46□□□□□ -1.7
VPS13AQ96RL7 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 AC093829.1-201ENST00000506662 1618 ntBASIC4.46□□□□□ -1.7
VPS13AQ96RL7 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 AC021146.4-201ENST00000309229 279 ntBASIC4.46□□□□□ -1.7
VPS13AQ96RL7 TAAR4P-201ENST00000454843 1039 ntBASIC4.46□□□□□ -1.7
VPS13AQ96RL7 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 RPS27AP13-201ENST00000498403 237 ntBASIC4.46□□□□□ -1.7
VPS13AQ96RL7 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.46□□□□□ -1.7
VPS13AQ96RL7 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
VPS13AQ96RL7 OR9K1P-202ENST00000641111 3217 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 MIR3065-201ENST00000390137 79 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 EIF4A1P3-201ENST00000411521 244 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AC092651.1-201ENST00000426110 312 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 MRPS21P3-201ENST00000436696 262 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 RN7SL517P-201ENST00000462240 305 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AC006499.5-201ENST00000505037 514 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AL356121.2-201ENST00000624715 780 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 RN7SKP159-201ENST00000410657 292 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 PTMAP3-201ENST00000447474 330 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 IGBP1P4-201ENST00000503202 879 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 GMPSP1-201ENST00000514075 579 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS13AQ96RL7 AL352984.2-202ENST00000613699 155 ntBASIC4.45□□□□□ -1.7
VPS13AQ96RL7 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 RNA5SP223-201ENST00000365174 120 ntBASIC4.44□□□□□ -1.7
VPS13AQ96RL7 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AP005205.1-201ENST00000563503 508 ntBASIC4.44□□□□□ -1.7
VPS13AQ96RL7 MTCYBP13-201ENST00000578634 1093 ntBASIC4.44□□□□□ -1.7
VPS13AQ96RL7 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 FTX-215ENST00000638681 9771 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 ABCC13-202ENST00000463099 3842 ntBASIC4.44□□□□□ -1.7
VPS13AQ96RL7 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 Z98745.1-201ENST00000402553 494 ntBASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.44□□□□□ -1.7
VPS13AQ96RL7 NDUFA5P1-201ENST00000433858 341 ntBASIC4.44□□□□□ -1.7
VPS13AQ96RL7 AC046176.1-201ENST00000435260 1170 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms