Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.57□□□□□ -1.84
FOXA3P55318 AC087821.1-201ENST00000623639 567 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
FOXA3P55318 AC027290.2-201ENST00000623210 18662 ntBASIC3.57□□□□□ -1.84
FOXA3P55318 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA3P55318 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA3P55318 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA3P55318 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA3P55318 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA3P55318 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 CASC19-255ENST00000641733 1385 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
FOXA3P55318 BPHL-201ENST00000380368 797 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 GSTM3P2-201ENST00000412746 530 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC106901.1-201ENST00000425086 698 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA3P55318 PRPF38AP2-201ENST00000438179 851 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 OR7E125P-201ENST00000443450 846 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXA3P55318 TCEA1P1-201ENST00000449716 880 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 IGHV5-78-201ENST00000450948 295 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC010469.1-201ENST00000463864 576 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC090142.2-201ENST00000483263 416 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC008897.1-201ENST00000494006 347 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC015864.1-201ENST00000496512 544 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC025445.1-201ENST00000502728 300 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 PGBD4P4-201ENST00000509673 613 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 OR51K1P-201ENST00000510214 950 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC3.56□□□□□ -1.84
FOXA3P55318 RNA5SP446-201ENST00000515955 82 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 RN7SKP183-201ENST00000517169 324 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA3P55318 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA3P55318 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA3P55318 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA3P55318 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC027455.1-201ENST00000574104 594 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
FOXA3P55318 AL359091.2-201ENST00000609303 556 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AL591926.1-201ENST00000620542 217 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC011815.3-201ENST00000624194 473 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 SAMMSON-209ENST00000641222 1100 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXA3P55318 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC018529.3-201ENST00000624212 2254 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 ASNSP1-201ENST00000518311 1939 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC090971.4-201ENST00000560291 1800 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
FOXA3P55318 AC027279.1-201ENST00000568885 4284 ntBASIC3.56□□□□□ -1.84
FOXA3P55318 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 KPNA2P2-201ENST00000419546 1489 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
FOXA3P55318 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
FOXA3P55318 SNORA67-201ENST00000384423 137 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 HMGB3P7-201ENST00000400214 611 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AL357515.1-201ENST00000402967 542 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 ATG4AP1-201ENST00000416893 538 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 DNAJA1P5-201ENST00000440278 943 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC3.55□□□□□ -1.84
FOXA3P55318 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA3P55318 AC000111.2-201ENST00000448200 210 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA3P55318 RPS26P41-201ENST00000450370 284 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC3.55□□□□□ -1.84
FOXA3P55318 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.55□□□□□ -1.84
FOXA3P55318 HSPE1P22-201ENST00000456856 327 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 APOOP2-201ENST00000461561 539 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC100832.1-201ENST00000471945 383 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 RN7SL97P-201ENST00000486780 299 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AK4P6-201ENST00000505168 528 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA3P55318 AC015795.1-201ENST00000513669 327 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA3P55318 AC126177.5-201ENST00000549599 178 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC3.55□□□□□ -1.84
FOXA3P55318 NMNAT1P1-201ENST00000554095 876 ntBASIC3.55□□□□□ -1.84
FOXA3P55318 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC3.55□□□□□ -1.84
FOXA3P55318 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms