Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.07□□□□□ -1.6
COL4A4P53420 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
COL4A4P53420 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.07□□□□□ -1.6
COL4A4P53420 TLK1P1-201ENST00000456760 2440 ntBASIC5.07□□□□□ -1.6
COL4A4P53420 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL4A4P53420 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL4A4P53420 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.07□□□□□ -1.6
COL4A4P53420 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.06□□□□□ -1.6
COL4A4P53420 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.06□□□□□ -1.6
COL4A4P53420 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A4P53420 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
COL4A4P53420 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A4P53420 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A4P53420 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.06□□□□□ -1.6
COL4A4P53420 FTH1P25-201ENST00000447665 469 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.06□□□□□ -1.6
COL4A4P53420 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 AC023424.1-201ENST00000496058 459 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 IGKV2-23-201ENST00000518729 323 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.06□□□□□ -1.6
COL4A4P53420 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.06□□□□□ -1.6
COL4A4P53420 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.06□□□□□ -1.6
COL4A4P53420 AC090948.1-201ENST00000607464 549 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 ZYXP1-201ENST00000617638 118 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A4P53420 AC112200.1-201ENST00000625015 234 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 U3.53-201ENST00000628922 216 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A4P53420 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A4P53420 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A4P53420 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A4P53420 SALL4P2-201ENST00000423288 2910 ntBASIC5.06□□□□□ -1.6
COL4A4P53420 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 AC008549.2-201ENST00000333482 706 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 NPM1P28-201ENST00000492269 840 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 RPL36AP41-201ENST00000493820 306 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.05□□□□□ -1.6
COL4A4P53420 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.05□□□□□ -1.6
COL4A4P53420 AL049794.2-201ENST00000616301 365 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
COL4A4P53420 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.05□□□□□ -1.6
COL4A4P53420 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.05□□□□□ -1.6
COL4A4P53420 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 PCNPP4-201ENST00000414817 517 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A4P53420 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.05□□□□□ -1.6
COL4A4P53420 AC090602.1-201ENST00000469695 252 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.05□□□□□ -1.6
COL4A4P53420 AC104763.1-201ENST00000475274 360 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 RNU6-709P-201ENST00000517257 104 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.05□□□□□ -1.6
COL4A4P53420 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL4A4P53420 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.05□□□□□ -1.6
COL4A4P53420 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC5.05□□□□□ -1.6
COL4A4P53420 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.05□□□□□ -1.6
COL4A4P53420 CYCSP40-201ENST00000575927 294 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 AC011477.5-201ENST00000586571 259 ntBASIC5.05□□□□□ -1.6
COL4A4P53420 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.05□□□□□ -1.6
COL4A4P53420 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.05□□□□□ -1.6
COL4A4P53420 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
COL4A4P53420 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL4A4P53420 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL4A4P53420 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.04□□□□□ -1.6
COL4A4P53420 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL4A4P53420 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.04□□□□□ -1.6
COL4A4P53420 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL4A4P53420 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL4A4P53420 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.04□□□□□ -1.6
COL4A4P53420 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
COL4A4P53420 SNORA70C-201ENST00000384538 135 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 CYCSP19-201ENST00000411715 316 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 AC011933.1-201ENST00000413334 321 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 AC140479.3-201ENST00000418944 1126 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 LINC00993-201ENST00000420453 540 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 RPL7AP25-201ENST00000423357 805 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 RGS17P1-201ENST00000423358 553 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 AL132765.1-201ENST00000434165 553 ntBASIC5.04□□□□□ -1.6
COL4A4P53420 RPL23AP93-201ENST00000440847 484 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms