Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A3P12111 RPL7P4-203ENST00000430239 730 ntBASIC4.7□□□□□ -1.66
COL6A3P12111 RPL23AP43-201ENST00000446445 471 ntBASIC4.7□□□□□ -1.66
COL6A3P12111 AC105233.3-201ENST00000531125 744 ntBASIC4.7□□□□□ -1.66
COL6A3P12111 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.7□□□□□ -1.66
COL6A3P12111 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A3P12111 AP001885.1-201ENST00000621658 558 ntBASIC4.7□□□□□ -1.66
COL6A3P12111 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC4.7□□□□□ -1.66
COL6A3P12111 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A3P12111 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A3P12111 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A3P12111 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A3P12111 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A3P12111 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A3P12111 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A3P12111 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC4.69□□□□□ -1.66
COL6A3P12111 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 AC009238.2-201ENST00000431026 355 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 FABP5P2-201ENST00000439042 408 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 RPL7AP61-201ENST00000443410 636 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A3P12111 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.69□□□□□ -1.66
COL6A3P12111 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A3P12111 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A3P12111 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.69□□□□□ -1.66
COL6A3P12111 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.69□□□□□ -1.66
COL6A3P12111 EXOC5-211ENST00000621441 10589 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
COL6A3P12111 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.69□□□□□ -1.66
COL6A3P12111 APOOP2-201ENST00000461561 539 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 RPS20P21-201ENST00000466859 343 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 AC104763.1-201ENST00000475274 360 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A3P12111 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.69□□□□□ -1.66
COL6A3P12111 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A3P12111 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC4.69□□□□□ -1.66
COL6A3P12111 AL354984.3-201ENST00000604803 325 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
COL6A3P12111 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 H2AFZP5-201ENST00000446960 382 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 FTH1P24-201ENST00000503502 462 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 RN7SKP57-201ENST00000517248 293 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 GNRHR2P1-201ENST00000555315 631 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.69□□□□□ -1.66
COL6A3P12111 AL356608.1-201ENST00000610034 820 ntBASIC4.69□□□□□ -1.66
COL6A3P12111 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A3P12111 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A3P12111 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 AL359195.2-201ENST00000623657 4412 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 ERG-202ENST00000398897 4651 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A3P12111 MIR128-1-201ENST00000384921 82 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 RGS17P1-201ENST00000423358 553 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 PPIAP13-201ENST00000434706 478 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A3P12111 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A3P12111 ATP5G1P3-201ENST00000463301 410 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 OR5B10P-201ENST00000532869 642 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 AC016957.2-201ENST00000616998 848 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 CASC22-202ENST00000628396 802 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A3P12111 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A3P12111 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 AC079777.1-201ENST00000623836 1953 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 PRDX3P3-201ENST00000447765 522 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.68□□□□□ -1.66
COL6A3P12111 RNU6-709P-201ENST00000517257 104 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A3P12111 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.68□□□□□ -1.66
COL6A3P12111 AC079880.2-201ENST00000603790 1213 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 ELOCP35-201ENST00000604289 336 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 DNAH1-201ENST00000420323 13104 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 AC004944.1-201ENST00000517807 3059 ntBASIC4.68□□□□□ -1.66
COL6A3P12111 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL6A3P12111 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
COL6A3P12111 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms