Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 XPOTP1-201ENST00000443317 2398 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGB1P09429 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGB1P09429 AL121886.1-201ENST00000358609 435 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 RNA5SP30-201ENST00000365552 115 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 U6.112-201ENST00000384129 70 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 IL6-203ENST00000401651 539 ntTSL 2 BASIC6.72□□□□□ -1.33
HMGB1P09429 Z68694.1-201ENST00000413929 841 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.72□□□□□ -1.33
HMGB1P09429 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGB1P09429 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGB1P09429 AP006222.1-205ENST00000450734 457 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGB1P09429 RN7SL284P-201ENST00000498823 275 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGB1P09429 AC114781.3-201ENST00000512083 142 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.72□□□□□ -1.33
HMGB1P09429 DEFB109D-201ENST00000529497 240 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.72□□□□□ -1.33
HMGB1P09429 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.72□□□□□ -1.33
HMGB1P09429 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HMGB1P09429 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HMGB1P09429 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 MIR4311-201ENST00000580794 100 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGB1P09429 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.72□□□□□ -1.33
HMGB1P09429 RN7SL544P-201ENST00000617232 284 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGB1P09429 RN7SL763P-201ENST00000620922 284 ntBASIC6.72□□□□□ -1.33
HMGB1P09429 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC6.72□□□□□ -1.33
HMGB1P09429 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6.72□□□□□ -1.33
HMGB1P09429 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HMGB1P09429 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HMGB1P09429 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC6.72□□□□□ -1.33
HMGB1P09429 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
HMGB1P09429 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC6.71□□□□□ -1.33
HMGB1P09429 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
HMGB1P09429 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.33
HMGB1P09429 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC6.71□□□□□ -1.33
HMGB1P09429 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC6.71□□□□□ -1.34
HMGB1P09429 ZNF849P-201ENST00000594711 1566 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 MIR375-201ENST00000362103 64 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 RNU6-984P-201ENST00000363236 109 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 GCNT6-201ENST00000379591 934 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AC005042.1-201ENST00000393397 800 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 RPL22P22-201ENST00000395439 379 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGB1P09429 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AC007394.1-201ENST00000421941 531 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 MRPL50P1-201ENST00000431951 384 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGB1P09429 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGB1P09429 NXT1P1-201ENST00000458481 316 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AC011476.1-201ENST00000466725 307 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AC126121.1-201ENST00000482313 553 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 RPS17P5-201ENST00000498293 408 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC6.71□□□□□ -1.34
HMGB1P09429 HMGN1P15-201ENST00000513870 295 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AC111000.6-201ENST00000514471 709 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGB1P09429 PMS2P3-207ENST00000529061 717 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGB1P09429 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC6.71□□□□□ -1.34
HMGB1P09429 VN1R88P-201ENST00000596787 292 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AC005191.1-201ENST00000603950 358 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AL499605.1-201ENST00000604628 403 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AL353726.1-201ENST00000614041 1000 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 MIR6071-201ENST00000616741 78 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 AP000943.4-201ENST00000622912 357 ntBASIC6.71□□□□□ -1.34
HMGB1P09429 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGB1P09429 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
HMGB1P09429 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.71□□□□□ -1.34
HMGB1P09429 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
HMGB1P09429 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC6.71□□□□□ -1.34
HMGB1P09429 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.71□□□□□ -1.34
HMGB1P09429 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
HMGB1P09429 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HMGB1P09429 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.7□□□□□ -1.34
HMGB1P09429 MTCO1P6-201ENST00000481192 1384 ntBASIC6.7□□□□□ -1.34
HMGB1P09429 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.7□□□□□ -1.34
HMGB1P09429 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms