Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CXCL1P09341 RPS26P15-201ENST00000488067 348 ntBASIC3.67□□□□□ -1.82
CXCL1P09341 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC3.67□□□□□ -1.82
CXCL1P09341 RNA5SP446-201ENST00000515955 82 ntBASIC3.67□□□□□ -1.82
CXCL1P09341 AC090151.1-201ENST00000520784 730 ntBASIC3.67□□□□□ -1.82
CXCL1P09341 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.67□□□□□ -1.82
CXCL1P09341 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC3.67□□□□□ -1.82
CXCL1P09341 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC3.67□□□□□ -1.82
CXCL1P09341 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CXCL1P09341 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC3.67□□□□□ -1.82
CXCL1P09341 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC3.67□□□□□ -1.82
CXCL1P09341 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC3.67□□□□□ -1.82
CXCL1P09341 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC3.67□□□□□ -1.82
CXCL1P09341 AL096712.1-201ENST00000614561 159 ntBASIC3.67□□□□□ -1.82
CXCL1P09341 HOTTIP_3.1-201ENST00000619957 337 ntBASIC3.67□□□□□ -1.82
CXCL1P09341 AC006453.5-201ENST00000636451 619 ntBASIC3.67□□□□□ -1.82
CXCL1P09341 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CXCL1P09341 AC091305.2-201ENST00000624049 1576 ntBASIC3.67□□□□□ -1.82
CXCL1P09341 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CXCL1P09341 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CXCL1P09341 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CXCL1P09341 AL929601.4-201ENST00000613011 1341 ntBASIC3.67□□□□□ -1.82
CXCL1P09341 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CXCL1P09341 AL031985.3-201ENST00000565390 2449 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC3.66□□□□□ -1.82
CXCL1P09341 SNORA67-201ENST00000384423 137 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AC073136.2-201ENST00000417282 849 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 AL133325.1-201ENST00000421090 382 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AL391219.1-201ENST00000422570 483 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 ELOCP18-201ENST00000434209 337 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC3.66□□□□□ -1.82
CXCL1P09341 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC3.66□□□□□ -1.82
CXCL1P09341 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC3.66□□□□□ -1.82
CXCL1P09341 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC3.66□□□□□ -1.82
CXCL1P09341 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 AC107015.1-201ENST00000466902 747 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 AC090013.1-201ENST00000485147 480 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC3.66□□□□□ -1.82
CXCL1P09341 AC015795.1-201ENST00000513669 327 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC3.66□□□□□ -1.82
CXCL1P09341 RNU6-941P-201ENST00000516346 108 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 RN7SKP5-201ENST00000517045 272 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC3.66□□□□□ -1.82
CXCL1P09341 MAL2-201ENST00000522112 573 ntTSL 4 BASIC3.66□□□□□ -1.82
CXCL1P09341 AC012339.2-201ENST00000523996 453 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC3.66□□□□□ -1.82
CXCL1P09341 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 CYP4A43P-201ENST00000568156 121 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AC010547.7-201ENST00000570323 333 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.66□□□□□ -1.82
CXCL1P09341 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 AL138895.2-201ENST00000603019 178 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AL049794.2-201ENST00000616301 365 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 AL359715.5-201ENST00000623431 443 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 RLIMP2-201ENST00000427891 1563 ntBASIC3.66□□□□□ -1.82
CXCL1P09341 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 ALB-209ENST00000503124 1741 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.66□□□□□ -1.82
CXCL1P09341 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CXCL1P09341 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.65□□□□□ -1.82
CXCL1P09341 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CXCL1P09341 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CXCL1P09341 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.82
CXCL1P09341 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
CXCL1P09341 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CXCL1P09341 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CXCL1P09341 ARL4AP5-201ENST00000404372 599 ntBASIC3.65□□□□□ -1.83
CXCL1P09341 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC3.65□□□□□ -1.83
CXCL1P09341 BX323845.1-201ENST00000432417 179 ntBASIC3.65□□□□□ -1.83
CXCL1P09341 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CXCL1P09341 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC3.65□□□□□ -1.83
CXCL1P09341 RANP1-206ENST00000455094 651 ntBASIC3.65□□□□□ -1.83
CXCL1P09341 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.65□□□□□ -1.83
CXCL1P09341 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
CXCL1P09341 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC3.65□□□□□ -1.83
CXCL1P09341 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms