Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MAPK10-304ENST00000641341 3984 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC079097.1-201ENST00000512187 1399 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC004975.1-201ENST00000428733 208 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 RPL23AP1-201ENST00000428990 471 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 IGBP1P3-201ENST00000447449 1000 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC090804.1-201ENST00000448870 490 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC243756.2-201ENST00000618406 463 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AP000473.2-201ENST00000602659 1537 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL031595.2-201ENST00000624215 19071 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 HNRNPA1P29-201ENST00000426409 879 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 SCAND3P1-201ENST00000439854 1060 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC022360.1-201ENST00000521058 340 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 RPL12P25-202ENST00000598100 674 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL121890.2-201ENST00000617644 465 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MSL3P1-202ENST00000440028 1468 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL590762.2-201ENST00000395798 571 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC117434.1-201ENST00000419971 836 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC245028.1-201ENST00000423259 256 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 CBX1P1-201ENST00000440184 427 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC041039.1-201ENST00000485656 536 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 IGKV1-32-201ENST00000519290 311 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC092709.1-201ENST00000521355 1045 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MIR4433B-201ENST00000581329 102 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MIR4737-201ENST00000583979 81 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC010487.1-201ENST00000594408 1172 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL445423.1-201ENST00000609941 536 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC015712.7-201ENST00000615211 635 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 ALB-214ENST00000509063 1911 ntTSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 SALL4P2-201ENST00000423288 2910 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC092376.2-201ENST00000622621 4116 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 OR1L6-202ENST00000373684 1044 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 KATNBL1P2-201ENST00000433311 835 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC010618.1-201ENST00000469924 477 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 NPM1P28-201ENST00000492269 840 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 AC093227.2-201ENST00000589357 285 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 ERVFRD-3-201ENST00000578561 1617 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC1.49□□□□□ -2.17
SYNE1Q8NF91 HYALP1-201ENST00000417674 1279 ntBASIC1.49□□□□□ -2.17
SYNE1Q8NF91 CYCSP10-201ENST00000417973 294 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms