Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MIR548I2-201ENST00000408348 149 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 RNU6ATAC23P-201ENST00000408448 123 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AL139184.1-202ENST00000422303 222 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 MTCO3P46-201ENST00000425787 232 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 DEFA9P-201ENST00000433042 285 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC010240.2-201ENST00000445363 1205 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 SDHCP3-201ENST00000445371 506 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC096922.1-201ENST00000461635 651 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC066616.1-201ENST00000486795 413 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 MRPS35P2-201ENST00000508242 191 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 RNU6-988P-201ENST00000519081 107 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 NRBF2P4-201ENST00000520874 850 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC087752.2-201ENST00000521219 281 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC008782.1-201ENST00000603386 430 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 MIR7109-201ENST00000613748 65 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC108479.2-201ENST00000617314 601 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AL445670.1-201ENST00000618889 801 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AL132796.3-201ENST00000624703 900 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC068213.1-201ENST00000625124 226 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 AC009948.3-201ENST00000603415 1798 ntBASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 HLF-210ENST00000575345 3589 ntTSL 2 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC7.25□□□□□ -1.25
NPAS3Q8IXF0 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC090983.1-201ENST00000623426 3897 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 RNU6-1017P-201ENST00000363613 106 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 Y_RNA.557-201ENST00000384680 107 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AL512422.1-201ENST00000407033 553 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 RN7SKP188-201ENST00000410789 317 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 RPS12P24-201ENST00000412619 387 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AL669831.1-202ENST00000428504 417 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 LYPLA1P1-201ENST00000434514 622 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 HMGB1P18-201ENST00000438801 619 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 HMGN2P26-201ENST00000463169 339 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 RPL7P39-201ENST00000481157 744 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC090013.1-201ENST00000485147 480 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 GUSBP9-201ENST00000510138 584 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 SNORA81.2-201ENST00000516868 170 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 BTF3P12-201ENST00000519620 469 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 IGHVIII-67-4-201ENST00000524281 296 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC007537.1-201ENST00000539347 327 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 SCOCP1-201ENST00000554676 349 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC018695.5-201ENST00000605872 315 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 FAM157A-202ENST00000615155 405 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC068722.2-201ENST00000618734 544 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AP005212.3-201ENST00000619964 528 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC022418.1-201ENST00000624118 445 ntBASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 OXSM-209ENST00000626005 309 ntTSL 3 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC7.24□□□□□ -1.25
NPAS3Q8IXF0 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 703 ms