Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 CDY2B-201ENST00000382867 1961 ntAPPRIS ALT1 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 GOSR2-238ENST00000640495 3395 ntTSL 5 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 ERAP2-201ENST00000379904 3219 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 CHAF1B-201ENST00000314103 4480 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 CLK1-215ENST00000621181 1843 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 MFSD8-218ENST00000641186 4448 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 GTF2H2B-203ENST00000508065 1432 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 GCNA-202ENST00000373696 2791 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 SCFD1-202ENST00000396629 2021 ntTSL 2 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 SEM1-215ENST00000615352 2637 ntTSL 5 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 RNU4-59P-201ENST00000364447 116 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 SMCP-201ENST00000368765 775 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 RNU6-244P-201ENST00000391028 104 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 PPIAP25-201ENST00000420177 540 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 GH2-202ENST00000423893 819 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 PYHIN5P-201ENST00000431627 723 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AC092802.3-201ENST00000434207 420 ntTSL 3 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 RPS3AP54-201ENST00000435535 734 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AC105402.2-201ENST00000438503 358 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AC123904.1-201ENST00000441072 368 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 MORF4-201ENST00000447135 971 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 GH2-204ENST00000456543 794 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 PPIAP28-201ENST00000458378 485 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 RN7SL239P-201ENST00000490061 300 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AL049874.2-201ENST00000492636 288 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 RN7SKP147-201ENST00000517154 244 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 MAL2-208ENST00000523307 556 ntTSL 4 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 LINC02318-202ENST00000556346 715 ntTSL 3 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 FDPSP3-201ENST00000556903 1013 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AC015722.1-201ENST00000557499 385 ntTSL 3 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 MIR3118-1-201ENST00000581787 76 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AC087645.1-201ENST00000588528 291 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AC092608.2-201ENST00000624427 218 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 NLRP8-202ENST00000590542 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 ZNF101-208ENST00000592502 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 SLC4A4-203ENST00000351898 3771 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 TOPORS-202ENST00000379858 3621 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 P2RY14-201ENST00000309170 2513 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 AL022163.1-201ENST00000430261 1569 ntBASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 LINC00934-202ENST00000630357 2291 ntTSL 2 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 C11orf88-203ENST00000529167 3099 ntAPPRIS ALT2 TSL 2 BASIC7.8□□□□□ -1.16
VPS9D1Q9Y2B5 MAPK10-233ENST00000515650 2394 ntTSL 5 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AC138627.1-203ENST00000641872 1680 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 ZNF235-201ENST00000291182 3188 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 ZNRD1ASP-211ENST00000376797 3270 ntTSL 2 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 OR4D6-201ENST00000300127 1054 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 Y_RNA.210-201ENST00000364161 110 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 RNU6-886P-201ENST00000384319 105 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 S100A13-202ENST00000392622 547 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AL078604.1-201ENST00000404609 466 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AC017035.1-201ENST00000411999 1115 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 RBMY2GP-201ENST00000418671 1034 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 SLIT1-AS1-201ENST00000424428 689 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AC007283.2-201ENST00000424739 197 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AL356387.1-201ENST00000426321 476 ntTSL 3 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 KRT18P53-201ENST00000431919 117 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 RBMY2NP-201ENST00000434454 1028 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AC003989.1-201ENST00000434569 565 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AC128716.1-201ENST00000475129 166 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 CR383656.1-201ENST00000484916 377 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 AC104687.1-201ENST00000485829 412 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 GAPDHP61-201ENST00000507324 1005 ntBASIC7.79□□□□□ -1.16
VPS9D1Q9Y2B5 MYL12AP1-201ENST00000518490 515 ntBASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms