Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PA2G4P6-201ENST00000438325 1197 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 ARAFP2-201ENST00000440565 559 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC073909.1-201ENST00000447112 999 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 RBMY2TP-201ENST00000451162 947 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 OR11I1P-201ENST00000486033 954 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 RN7SL466P-201ENST00000497546 295 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 SCARNA16.4-201ENST00000516956 187 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 UBTFL9-201ENST00000534504 1148 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 DUX4L52-201ENST00000549363 777 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC040958.1-201ENST00000561102 201 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC007225.2-201ENST00000562529 256 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 RN7SL356P-201ENST00000582228 248 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC004241.3-201ENST00000611728 517 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 MIR6886-201ENST00000619864 61 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NKX3-1Q99801 AC011755.1-201ENST00000623763 2049 ntBASIC4.56□□□□□ -1.68
NKX3-1Q99801 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
NKX3-1Q99801 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NKX3-1Q99801 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
NKX3-1Q99801 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 RARSP1-201ENST00000542842 1418 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 CASC19-248ENST00000641674 1356 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 RNU1-19P-201ENST00000363306 165 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AL590806.1-201ENST00000415818 853 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 RPA2P2-201ENST00000419698 796 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC092570.3-201ENST00000420113 693 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 HSFY7P-201ENST00000432672 318 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 HSFY8P-201ENST00000437934 318 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 TCEA1P3-201ENST00000443005 880 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 RNFT1P2-201ENST00000443064 757 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AL450996.1-201ENST00000445574 1202 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 HSFY5P-201ENST00000453726 309 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC021660.1-201ENST00000465006 554 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 NPM1P29-201ENST00000483112 803 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC016550.1-201ENST00000505348 785 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC074087.1-201ENST00000512059 724 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 MTCYBP19-201ENST00000517463 1124 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC023158.1-201ENST00000561632 1025 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AP005262.1-201ENST00000582646 997 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 DNAJC19P3-201ENST00000594491 331 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC006272.2-201ENST00000594725 163 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AP002884.5-201ENST00000595053 1132 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC073137.1-201ENST00000605636 634 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC015849.2-201ENST00000605738 409 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC079395.2-201ENST00000610982 737 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC132068.1-201ENST00000623805 459 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC027228.2-201ENST00000567141 2154 ntBASIC4.55□□□□□ -1.68
NKX3-1Q99801 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.55□□□□□ -1.68
NKX3-1Q99801 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NKX3-1Q99801 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 TTC39DP-201ENST00000416781 1688 ntBASIC4.54□□□□□ -1.68
NKX3-1Q99801 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC4.54□□□□□ -1.68
NKX3-1Q99801 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms