Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 RAD1P2-201ENST00000446414 663 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 TPT1P12-201ENST00000448968 492 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC243772.1-201ENST00000451620 410 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 RPL10P17-201ENST00000453852 316 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC022133.1-201ENST00000490961 571 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 RN7SKP260-201ENST00000516907 149 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 IGHV3-63-201ENST00000518422 341 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 OR4V1P-201ENST00000525394 1140 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AL162431.4-201ENST00000604674 411 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 SOCS5P3-201ENST00000425115 1576 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 RN7SKP149-201ENST00000363008 344 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 RNU6-819P-201ENST00000364116 107 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 VDAC2P1-201ENST00000399358 958 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AL078599.1-201ENST00000402075 293 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 GJA6P-201ENST00000415117 1042 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AL590139.1-201ENST00000416267 400 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC006065.1-201ENST00000422539 802 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 UBE2V2P3-201ENST00000433562 437 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 TPTE2P1-204ENST00000435256 593 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 CYCSP11-201ENST00000436426 315 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 RPL12P18-201ENST00000437175 325 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 CACYBPP1-201ENST00000438592 684 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 IGBP1P4-201ENST00000503202 879 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 BTG4P1-201ENST00000510421 183 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 SNORA70.17-201ENST00000516449 133 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC234771.5-201ENST00000600161 514 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC002069.2-201ENST00000603580 883 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC108738.1-201ENST00000603703 237 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 HMGB1P51-201ENST00000605166 638 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC034236.3-201ENST00000605999 461 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AL023583.1-201ENST00000607518 1143 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AL161616.1-201ENST00000611867 286 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC012414.7-202ENST00000622705 1090 ntBASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HDDC3Q8N4P3 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 RNU6-670P-201ENST00000364312 104 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 RNA5SP455-201ENST00000365190 119 ntBASIC5.22□□□□□ -1.57
HDDC3Q8N4P3 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms