Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RPL7AP6-201ENST00000477943 801 ntBASIC5.81□□□□□ -1.48
CIITAP33076 STRADBP1-201ENST00000478954 1281 ntBASIC5.81□□□□□ -1.48
CIITAP33076 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.81□□□□□ -1.48
CIITAP33076 AC004453.1-201ENST00000487895 408 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.81□□□□□ -1.48
CIITAP33076 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CIITAP33076 SSR3-208ENST00000496050 579 ntTSL 4 BASIC5.81□□□□□ -1.48
CIITAP33076 RN7SL808P-201ENST00000496066 299 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AK4P6-201ENST00000505168 528 ntBASIC5.81□□□□□ -1.48
CIITAP33076 HAUS1P1-201ENST00000505275 832 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AC016550.1-201ENST00000505348 785 ntBASIC5.81□□□□□ -1.48
CIITAP33076 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.81□□□□□ -1.48
CIITAP33076 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC5.81□□□□□ -1.48
CIITAP33076 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CIITAP33076 AC013701.1-201ENST00000522657 465 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.81□□□□□ -1.48
CIITAP33076 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CIITAP33076 AC044860.2-201ENST00000561005 179 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.81□□□□□ -1.48
CIITAP33076 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.81□□□□□ -1.48
CIITAP33076 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC5.81□□□□□ -1.48
CIITAP33076 AL450270.1-201ENST00000606160 391 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AC211433.2-201ENST00000608433 387 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AL592494.3-201ENST00000609485 464 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AL627230.1-201ENST00000613077 211 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AC016597.2-201ENST00000613256 341 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AC037198.3-201ENST00000616754 526 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AL591926.8-201ENST00000616876 211 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AL163051.2-201ENST00000618976 735 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AC068870.2-201ENST00000620635 389 ntBASIC5.81□□□□□ -1.48
CIITAP33076 AP002799.1-201ENST00000623552 423 ntBASIC5.81□□□□□ -1.48
CIITAP33076 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.81□□□□□ -1.48
CIITAP33076 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.81□□□□□ -1.48
CIITAP33076 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.81□□□□□ -1.48
CIITAP33076 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CIITAP33076 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CIITAP33076 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
CIITAP33076 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
CIITAP33076 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
CIITAP33076 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CIITAP33076 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CIITAP33076 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.8□□□□□ -1.48
CIITAP33076 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CIITAP33076 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CIITAP33076 RNU6-40P-201ENST00000384254 107 ntBASIC5.8□□□□□ -1.48
CIITAP33076 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
CIITAP33076 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.8□□□□□ -1.48
CIITAP33076 UQCRFS1P3-201ENST00000407697 385 ntBASIC5.8□□□□□ -1.48
CIITAP33076 BRWD1P3-201ENST00000428816 390 ntBASIC5.8□□□□□ -1.48
CIITAP33076 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.8□□□□□ -1.48
CIITAP33076 PSMD10P3-201ENST00000437000 448 ntBASIC5.8□□□□□ -1.48
CIITAP33076 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.8□□□□□ -1.48
CIITAP33076 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.8□□□□□ -1.48
CIITAP33076 ATP5G1P3-201ENST00000463301 410 ntBASIC5.8□□□□□ -1.48
CIITAP33076 RN7SL329P-201ENST00000467740 299 ntBASIC5.8□□□□□ -1.48
CIITAP33076 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.8□□□□□ -1.48
CIITAP33076 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC5.8□□□□□ -1.48
CIITAP33076 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.8□□□□□ -1.48
CIITAP33076 AC093801.2-201ENST00000503966 1050 ntBASIC5.8□□□□□ -1.48
CIITAP33076 AC010460.2-201ENST00000509054 677 ntBASIC5.8□□□□□ -1.48
CIITAP33076 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.8□□□□□ -1.48
CIITAP33076 RN7SKP66-201ENST00000516681 231 ntBASIC5.8□□□□□ -1.48
CIITAP33076 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.8□□□□□ -1.48
CIITAP33076 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.8□□□□□ -1.48
CIITAP33076 CKS1BP1-201ENST00000555221 240 ntBASIC5.8□□□□□ -1.48
CIITAP33076 AC040958.1-201ENST00000561102 201 ntBASIC5.8□□□□□ -1.48
CIITAP33076 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
CIITAP33076 AC015911.5-201ENST00000587076 451 ntBASIC5.8□□□□□ -1.48
CIITAP33076 AC093799.2-201ENST00000610062 578 ntBASIC5.8□□□□□ -1.48
CIITAP33076 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC5.8□□□□□ -1.48
CIITAP33076 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC5.8□□□□□ -1.48
CIITAP33076 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.8□□□□□ -1.48
CIITAP33076 DDX6P1-205ENST00000441966 1436 ntBASIC5.8□□□□□ -1.48
CIITAP33076 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CIITAP33076 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
CIITAP33076 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CIITAP33076 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.79□□□□□ -1.48
CIITAP33076 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CIITAP33076 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CIITAP33076 SMG1P7-201ENST00000565246 2704 ntBASIC5.79□□□□□ -1.48
CIITAP33076 AP001029.2-203ENST00000589795 4910 ntBASIC5.79□□□□□ -1.48
CIITAP33076 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CIITAP33076 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CIITAP33076 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.79□□□□□ -1.48
CIITAP33076 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CIITAP33076 SNORA63.3-201ENST00000362682 132 ntBASIC5.79□□□□□ -1.48
CIITAP33076 SNORA72.3-201ENST00000365074 132 ntBASIC5.79□□□□□ -1.48
CIITAP33076 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CIITAP33076 AL390316.1-201ENST00000406279 553 ntBASIC5.79□□□□□ -1.48
CIITAP33076 RPL12P9-201ENST00000412942 488 ntBASIC5.79□□□□□ -1.48
CIITAP33076 COX5BP7-201ENST00000414780 274 ntBASIC5.79□□□□□ -1.48
CIITAP33076 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC5.79□□□□□ -1.48
CIITAP33076 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.79□□□□□ -1.48
CIITAP33076 BX323845.1-201ENST00000432417 179 ntBASIC5.79□□□□□ -1.48
CIITAP33076 ARL5AP3-201ENST00000439327 386 ntBASIC5.79□□□□□ -1.48
CIITAP33076 RPL34P20-201ENST00000442771 351 ntBASIC5.79□□□□□ -1.48
CIITAP33076 OR52E3P-201ENST00000452083 936 ntBASIC5.79□□□□□ -1.48
CIITAP33076 HMGN2P25-201ENST00000486956 268 ntBASIC5.79□□□□□ -1.48
CIITAP33076 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.79□□□□□ -1.48
CIITAP33076 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms