Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A3P25940 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL5A3P25940 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A3P25940 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
COL5A3P25940 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.85□□□□□ -1.47
COL5A3P25940 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL5A3P25940 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.85□□□□□ -1.47
COL5A3P25940 E2F6P2-201ENST00000420708 748 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 RN7SL691P-201ENST00000494487 301 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 AC023424.1-201ENST00000496058 459 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.85□□□□□ -1.47
COL5A3P25940 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC5.85□□□□□ -1.47
COL5A3P25940 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.85□□□□□ -1.47
COL5A3P25940 RNA5SP196-201ENST00000625967 102 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 AC140479.6-201ENST00000633535 357 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 OR8B1P-202ENST00000641132 1178 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A3P25940 SAMM50P1-201ENST00000455403 1399 ntBASIC5.85□□□□□ -1.47
COL5A3P25940 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL5A3P25940 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL5A3P25940 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.85□□□□□ -1.47
COL5A3P25940 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL5A3P25940 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL5A3P25940 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.84□□□□□ -1.47
COL5A3P25940 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
COL5A3P25940 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
COL5A3P25940 AC005261.4-201ENST00000600047 1385 ntBASIC5.84□□□□□ -1.47
COL5A3P25940 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.84□□□□□ -1.47
COL5A3P25940 AL445189.1-201ENST00000405722 338 ntBASIC5.84□□□□□ -1.47
COL5A3P25940 RPL23AP26-201ENST00000412728 464 ntBASIC5.84□□□□□ -1.47
COL5A3P25940 RPL34P6-201ENST00000432390 345 ntBASIC5.84□□□□□ -1.47
COL5A3P25940 AC015912.2-201ENST00000571053 181 ntBASIC5.84□□□□□ -1.47
COL5A3P25940 AC020634.1-201ENST00000608701 549 ntBASIC5.84□□□□□ -1.47
COL5A3P25940 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL5A3P25940 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.84□□□□□ -1.48
COL5A3P25940 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
COL5A3P25940 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
COL5A3P25940 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 AL121657.1-201ENST00000327215 531 ntBASIC5.83□□□□□ -1.48
COL5A3P25940 MIR23A-201ENST00000385245 73 ntBASIC5.83□□□□□ -1.48
COL5A3P25940 AL590762.2-201ENST00000395798 571 ntBASIC5.83□□□□□ -1.48
COL5A3P25940 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.83□□□□□ -1.48
COL5A3P25940 GLRXP2-201ENST00000555594 321 ntBASIC5.83□□□□□ -1.48
COL5A3P25940 AC090515.3-201ENST00000560431 315 ntBASIC5.83□□□□□ -1.48
COL5A3P25940 ZYXP1-201ENST00000617638 118 ntBASIC5.83□□□□□ -1.48
COL5A3P25940 AL161637.1-201ENST00000622380 412 ntBASIC5.83□□□□□ -1.48
COL5A3P25940 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC5.83□□□□□ -1.48
COL5A3P25940 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 CPHL1P-201ENST00000461341 3407 ntBASIC5.83□□□□□ -1.48
COL5A3P25940 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
COL5A3P25940 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL5A3P25940 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL5A3P25940 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.83□□□□□ -1.48
COL5A3P25940 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 SDHCP2-201ENST00000398565 501 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.82□□□□□ -1.48
COL5A3P25940 AL132765.1-201ENST00000434165 553 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 PHBP16-201ENST00000446318 950 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 UQCRHP4-201ENST00000471686 272 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 AC005868.1-201ENST00000536421 331 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.82□□□□□ -1.48
COL5A3P25940 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.82□□□□□ -1.48
COL5A3P25940 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 MIR92B-201ENST00000607575 96 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 MIR6891-201ENST00000618788 93 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.82□□□□□ -1.48
COL5A3P25940 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
COL5A3P25940 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC5.82□□□□□ -1.48
COL5A3P25940 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.82□□□□□ -1.48
COL5A3P25940 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL5A3P25940 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.82□□□□□ -1.48
COL5A3P25940 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL5A3P25940 RPS26P8-201ENST00000393490 348 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 PPIAP31-201ENST00000405422 495 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 CKS1BP6-201ENST00000424932 240 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 RPS12P10-201ENST00000427031 377 ntBASIC5.82□□□□□ -1.48
COL5A3P25940 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms