Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.71□□□□□ -1.66
LMX1BO60663 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 AC114878.2-201ENST00000604863 1251 ntBASIC4.71□□□□□ -1.66
LMX1BO60663 AC024940.4-201ENST00000605507 246 ntBASIC4.71□□□□□ -1.66
LMX1BO60663 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.71□□□□□ -1.66
LMX1BO60663 MTND2P41-201ENST00000637599 773 ntBASIC4.71□□□□□ -1.66
LMX1BO60663 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.71□□□□□ -1.66
LMX1BO60663 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LMX1BO60663 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
LMX1BO60663 ADAM5-202ENST00000399789 1942 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 RNU6-1331P-201ENST00000363658 106 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 OR1L6-202ENST00000373684 1044 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 MIR585-201ENST00000384887 94 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 RN7SKP213-201ENST00000410746 298 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 RN7SKP216-201ENST00000411050 312 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 RNF19BPX-201ENST00000426224 625 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 RPL7AP49-201ENST00000429522 581 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AL591438.1-201ENST00000433508 581 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 CYCSP12-201ENST00000437729 300 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.7□□□□□ -1.66
LMX1BO60663 RNFT1P2-201ENST00000443064 757 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 MTND2P8-201ENST00000450555 1025 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AL450023.1-201ENST00000450868 751 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AURKAPS1-201ENST00000451805 1212 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 RPL7P45-201ENST00000455851 743 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC093166.2-201ENST00000455969 1017 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC090589.1-201ENST00000473109 362 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC008953.1-201ENST00000497334 318 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 FABP5P6-201ENST00000510588 409 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC026782.2-201ENST00000510845 636 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.7□□□□□ -1.66
LMX1BO60663 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 RNU5A-7P-201ENST00000515979 116 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 RN7SKP287-201ENST00000516546 266 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 KCTD9P6-201ENST00000522306 950 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 AC010547.7-201ENST00000570323 333 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC4.7□□□□□ -1.66
LMX1BO60663 HMGB1P51-201ENST00000605166 638 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 MIR1264-201ENST00000616374 69 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 CYCSP41-201ENST00000616920 296 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC4.7□□□□□ -1.66
LMX1BO60663 uc_338.7-201ENST00000621834 124 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC132068.1-201ENST00000623805 459 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC126544.2-201ENST00000625174 749 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 HSPD1P14-201ENST00000432666 1618 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.7□□□□□ -1.66
LMX1BO60663 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 AL929601.4-201ENST00000613011 1341 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 AC083843.2-201ENST00000568248 6253 ntBASIC4.7□□□□□ -1.66
LMX1BO60663 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LMX1BO60663 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms