Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC140113.4-201ENST00000622087 222 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 TMEM30CP-203ENST00000637814 1035 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 AC053481.2-202ENST00000582394 1500 ntBASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC112Q8NEF3 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 PABPC1P6-201ENST00000445594 1829 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 RNU6-249P-201ENST00000363016 102 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 RNU4-44P-201ENST00000363050 141 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 RNA5SP28-201ENST00000363841 119 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 RNA5SP372-201ENST00000390836 115 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 RN7SL172P-201ENST00000460535 303 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 HIGD1AP14-201ENST00000507617 282 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 GLRXP2-201ENST00000555594 321 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC079075.1-201ENST00000559543 878 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 AC091979.2-201ENST00000607514 214 ntBASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC112Q8NEF3 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC112Q8NEF3 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.4□□□□□ -1.55
CCDC112Q8NEF3 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC112Q8NEF3 OR51H2P-202ENST00000641424 3046 ntBASIC5.4□□□□□ -1.55
CCDC112Q8NEF3 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AL139039.2-201ENST00000407436 479 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 CEACAMP8-201ENST00000413902 580 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC004690.1-201ENST00000418216 328 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC004448.2-201ENST00000422360 586 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 GTF2IP2-201ENST00000424290 697 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC093655.2-201ENST00000425735 631 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 RANP1-206ENST00000455094 651 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 RPL7P45-201ENST00000455851 743 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 RN7SL558P-201ENST00000497468 299 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 RPS4XP20-201ENST00000505751 772 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 RNU6-1334P-201ENST00000516032 105 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 RNU6-941P-201ENST00000516346 108 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC024940.3-201ENST00000538551 316 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 ATP5J2P6-201ENST00000565203 266 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC016769.4-201ENST00000616893 535 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC235565.1-201ENST00000456962 1325 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 AC007382.1-201ENST00000624376 2618 ntBASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC112Q8NEF3 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 BX323845.1-201ENST00000432417 179 ntBASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 CYCSP12-201ENST00000437729 300 ntBASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC112Q8NEF3 RN7SL515P-201ENST00000463999 297 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms