Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TRAV11-201ENST00000539512 339 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AL512310.9-201ENST00000553311 948 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AC092159.4-201ENST00000624944 550 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 MIR7641-1-201ENST00000627518 61 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 AP000473.2-201ENST00000602659 1537 ntBASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.26□□□□□ -1.57
HDDC3Q8N4P3 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 SNURFL-201ENST00000309296 343 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 RN7SKP104-201ENST00000362605 328 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 RNA5SP90-201ENST00000364801 99 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 RNU1-74P-201ENST00000384108 171 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 PEX12P1-201ENST00000400284 1048 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 ST13P16-201ENST00000401760 781 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 NUDT19P3-201ENST00000404698 555 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AL133482.1-201ENST00000415988 498 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 EI24P4-201ENST00000423683 1078 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 C4BPAP2-201ENST00000428434 478 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AL138878.2-201ENST00000440581 1241 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 TRY2P-201ENST00000448860 689 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC083899.1-201ENST00000454465 3819 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC097484.1-201ENST00000471148 389 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 RPL7P16-201ENST00000479738 738 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 RN7SL346P-201ENST00000491561 294 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 PRELID3BP5-201ENST00000508612 460 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 HMGN1P9-201ENST00000515212 298 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AP002967.1-201ENST00000624203 539 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 AC079298.1-201ENST00000625026 1619 ntBASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.25□□□□□ -1.57
HDDC3Q8N4P3 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC007342.7-201ENST00000624610 2337 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 STX3-208ENST00000641815 3236 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC010266.2-201ENST00000564741 3255 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AL356967.1-201ENST00000406305 431 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AL034374.1-201ENST00000406329 351 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 MIR1182-201ENST00000408363 97 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC091390.1-201ENST00000433904 331 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 PRPF38AP2-201ENST00000438179 851 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AL359265.1-201ENST00000440296 795 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 AC023271.1-201ENST00000445936 1090 ntBASIC5.24□□□□□ -1.57
HDDC3Q8N4P3 CASP3P1-201ENST00000446037 609 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 147.7 ms