Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC064862.4-201ENST00000442180 334 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 OTX2P1-201ENST00000450956 354 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 HMGB1P4-201ENST00000455362 567 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 RN7SL799P-201ENST00000475891 298 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 RNA5SP497-201ENST00000516081 97 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 IGKV2-4-201ENST00000523070 340 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC104687.2-201ENST00000604442 342 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AL139286.1-201ENST00000604465 483 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC100767.2-201ENST00000604840 693 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 AL691477.1-201ENST00000624398 162 ntBASIC4.41□□□□□ -1.7
CCDC58Q4VC31 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 FGG-201ENST00000336098 1659 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC58Q4VC31 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC58Q4VC31 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC58Q4VC31 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC58Q4VC31 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.4□□□□□ -1.7
CCDC58Q4VC31 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.4□□□□□ -1.7
CCDC58Q4VC31 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC58Q4VC31 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC008549.2-201ENST00000333482 706 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 RN7SKP124-201ENST00000364730 341 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 SNORA67-201ENST00000384423 137 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 MIR195-201ENST00000385194 87 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC013410.1-201ENST00000436223 1232 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 RBMY2TP-201ENST00000451162 947 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 RPSAP39-201ENST00000467439 883 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 APOBEC3AP1-201ENST00000511396 287 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC090819.1-201ENST00000523800 1111 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC134349.2-201ENST00000535136 910 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 MIR4271-201ENST00000582451 67 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC069307.1-201ENST00000602820 447 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 AC235565.1-201ENST00000456962 1325 ntBASIC4.4□□□□□ -1.71
CCDC58Q4VC31 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC58Q4VC31 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC58Q4VC31 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC58Q4VC31 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.39□□□□□ -1.71
CCDC58Q4VC31 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC58Q4VC31 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC58Q4VC31 MIR365B-201ENST00000362317 111 ntBASIC4.39□□□□□ -1.71
CCDC58Q4VC31 RN7SKP187-201ENST00000365536 330 ntBASIC4.39□□□□□ -1.71
CCDC58Q4VC31 RNA5SP284-201ENST00000384547 118 ntBASIC4.39□□□□□ -1.71
CCDC58Q4VC31 LYPLA1P3-201ENST00000402650 695 ntBASIC4.39□□□□□ -1.71
CCDC58Q4VC31 AL592291.1-201ENST00000403830 352 ntBASIC4.39□□□□□ -1.71
CCDC58Q4VC31 SNORA77-201ENST00000408716 125 ntBASIC4.39□□□□□ -1.71
CCDC58Q4VC31 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC58Q4VC31 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC58Q4VC31 CYCSP12-201ENST00000437729 300 ntBASIC4.39□□□□□ -1.71
CCDC58Q4VC31 AC073052.1-201ENST00000440417 714 ntBASIC4.39□□□□□ -1.71
CCDC58Q4VC31 AL354714.3-201ENST00000447284 493 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms