Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CLDN3O15551 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CLDN3O15551 AC099654.2-201ENST00000433031 1980 ntBASIC5.42□□□□□ -1.54
CLDN3O15551 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.42□□□□□ -1.54
CLDN3O15551 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.42□□□□□ -1.54
CLDN3O15551 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.41□□□□□ -1.54
CLDN3O15551 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.41□□□□□ -1.54
CLDN3O15551 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CLDN3O15551 AC003985.2-201ENST00000562268 1669 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CLDN3O15551 IRF5P1-201ENST00000504852 2164 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CLDN3O15551 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.41□□□□□ -1.54
CLDN3O15551 OR13C3-201ENST00000374781 1108 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 RNU6-1320P-201ENST00000390838 107 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 RNU6-1269P-201ENST00000391139 107 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.41□□□□□ -1.54
CLDN3O15551 COX6B1P1-201ENST00000415962 213 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 RNU6-599P-201ENST00000459383 107 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 RNU6-1193P-201ENST00000459461 107 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 RPS17P2-201ENST00000461663 408 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 RPL7P16-201ENST00000479738 738 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 AC231760.1-201ENST00000498002 260 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CLDN3O15551 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.41□□□□□ -1.54
CLDN3O15551 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.41□□□□□ -1.54
CLDN3O15551 BTF3P13-201ENST00000513224 490 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.41□□□□□ -1.54
CLDN3O15551 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.41□□□□□ -1.54
CLDN3O15551 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CLDN3O15551 AL358913.1-201ENST00000554342 121 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 AC011270.1-201ENST00000558606 583 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 MIR3934-201ENST00000579806 107 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5.41□□□□□ -1.54
CLDN3O15551 AL445528.2-201ENST00000620582 470 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 RNU6-368P-201ENST00000620928 107 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 AC019206.1-201ENST00000621938 425 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 RNU6-538P-201ENST00000622329 107 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CLDN3O15551 AC073869.10-201ENST00000642016 354 ntBASIC5.41□□□□□ -1.54
CLDN3O15551 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.41□□□□□ -1.54
CLDN3O15551 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CLDN3O15551 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CLDN3O15551 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CLDN3O15551 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
CLDN3O15551 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CLDN3O15551 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.41□□□□□ -1.54
CLDN3O15551 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.41□□□□□ -1.54
CLDN3O15551 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.41□□□□□ -1.54
CLDN3O15551 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CLDN3O15551 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CLDN3O15551 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
CLDN3O15551 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CLDN3O15551 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
CLDN3O15551 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CLDN3O15551 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CLDN3O15551 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CLDN3O15551 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CLDN3O15551 SNORA73.1-201ENST00000363107 205 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 RNU6-697P-201ENST00000363348 107 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 AL133270.1-201ENST00000402635 279 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.4□□□□□ -1.54
CLDN3O15551 AC013429.2-201ENST00000418798 781 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 AC073648.4-201ENST00000442655 781 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 RPS3AP41-201ENST00000462701 778 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.4□□□□□ -1.54
CLDN3O15551 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.4□□□□□ -1.54
CLDN3O15551 BRD9P1-201ENST00000529855 560 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.4□□□□□ -1.54
CLDN3O15551 AC021006.3-201ENST00000530771 192 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 OR5D15P-201ENST00000531671 942 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.4□□□□□ -1.54
CLDN3O15551 GCSHP4-201ENST00000538792 439 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 LSM3P2-201ENST00000551246 273 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.4□□□□□ -1.54
CLDN3O15551 AC116553.2-201ENST00000564203 463 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.4□□□□□ -1.54
CLDN3O15551 AC024940.4-201ENST00000605507 246 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.4□□□□□ -1.54
CLDN3O15551 AC138965.3-201ENST00000623875 498 ntBASIC5.4□□□□□ -1.54
CLDN3O15551 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.4□□□□□ -1.55
CLDN3O15551 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
CLDN3O15551 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CLDN3O15551 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CLDN3O15551 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.55
CLDN3O15551 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CLDN3O15551 THAP12P5-201ENST00000405864 2275 ntBASIC5.4□□□□□ -1.55
CLDN3O15551 AL731532.2-201ENST00000623542 1953 ntBASIC5.4□□□□□ -1.55
CLDN3O15551 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.55
CLDN3O15551 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CLDN3O15551 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
CLDN3O15551 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.4□□□□□ -1.55
CLDN3O15551 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.39□□□□□ -1.55
CLDN3O15551 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.39□□□□□ -1.55
CLDN3O15551 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.39□□□□□ -1.55
CLDN3O15551 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CLDN3O15551 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CLDN3O15551 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CLDN3O15551 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CLDN3O15551 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms