Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CCDC39Q9UFE4 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 CASC19-246ENST00000641625 1606 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 Y_RNA.62-201ENST00000362840 99 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 RN7SKP186-201ENST00000365371 303 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 U3.23-201ENST00000391132 200 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 DEFB108C-201ENST00000400154 252 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 PRELID1P1-201ENST00000403549 660 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AL589994.1-201ENST00000404962 340 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 OSTCP4-201ENST00000424397 449 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 IGLV3-4-201ENST00000432300 244 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 NANOGP2-201ENST00000435391 727 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 TRIM60P8Y-201ENST00000436338 762 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AL356121.1-201ENST00000442911 156 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 NECAP1P2-201ENST00000455668 727 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 UBDP1-202ENST00000457888 382 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINC00888-204ENST00000487386 421 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 PCNAP1-201ENST00000505363 709 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 CBX3P3-201ENST00000508108 532 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 OR4D12P-201ENST00000509361 911 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC010285.3-201ENST00000511668 676 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC091965.2-201ENST00000512324 613 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 ODF1-202ENST00000518835 368 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC010547.7-201ENST00000570323 333 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC027229.1-201ENST00000583887 253 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC063977.7-201ENST00000594454 337 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC055876.5-201ENST00000605667 259 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC089999.3-201ENST00000622440 577 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 ZNF680P1-201ENST00000436625 1469 ntBASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC7.03□□□□□ -1.28
CCDC39Q9UFE4 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
CCDC39Q9UFE4 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC7.02□□□□□ -1.28
CCDC39Q9UFE4 EEF1A1P21-201ENST00000512363 1344 ntBASIC7.02□□□□□ -1.28
CCDC39Q9UFE4 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC7.02□□□□□ -1.28
CCDC39Q9UFE4 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 AC022325.1-201ENST00000502748 2199 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 BX284613.1-201ENST00000452221 1641 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 RNU6-1119P-201ENST00000384349 108 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 RSL24D1P4-201ENST00000400938 484 ntBASIC7.02□□□□□ -1.29
CCDC39Q9UFE4 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms